| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1586680 | 18 (0.770) | 3 (0.130) | 3/244 | NT | 15.3% | coding (768/909 nt) | PP_1391 | LysR family transcriptional regulator |
| ? | NC_002947 | = 1586719 | 16 (0.710) | coding (729/909 nt) | PP_1391 | LysR family transcriptional regulator | |||||
AAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGCTGGCCGGCTACCGCGAAATGCCACAAGCTGT > NC_002947/1586576‑1586858 | aaaCGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTgg > 1:158416/1‑150 (MQ=255)aaaCGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTgg < 2:434678/150‑1 (MQ=255) aaTCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGCCGCAC‑CCGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATgg > 2:587499/1‑150 (MQ=255) aaTCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATgg < 1:222832/150‑1 (MQ=255) aGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATa > 2:11233/1‑150 (MQ=255) gCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATAc < 2:296111/150‑1 (MQ=255) gCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCa < 2:158416/150‑1 (MQ=255) gtTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCa < 2:53988/150‑1 (MQ=255) tGCGCGACGTATACACCGCATTCAGGTTCATTTCACGCTCTTTGGCCTCAGGCAGCAGACGTACACAG‑CGAGGGCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAggg < 1:11233/150‑1 (MQ=255) tGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAggg < 1:587499/150‑1 (MQ=255) tCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGa > 2:370461/1‑150 (MQ=255) agttcaCGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCg < 1:370461/150‑1 (MQ=255) ttcaCGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGa > 2:134264/1‑150 (MQ=255) gCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGgcctgaggccaaaccgcgtgaactgaacctgaatgcggtgtatacgtcgcgcaaacacatgccgg < 2:159892‑M2/113‑66 (MQ=255) gCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGgcctgaggccaaaccgcgtgaactgaacctgaatgcggtgtatacgtcgcgcaaacacatgccgg > 1:159892‑M2/1‑48 (MQ=255) ccTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGa > 2:185057/1‑150 (MQ=255) ggCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGgcctgagaccaaaccgcgtgaactgaacctgaatgcggtgtatacgtcgcgcaaacacatgccggcgaccttgcgcagcatgctggatttcctggtgcagcgtttcaa < 1:436016‑M2/150‑109 (MQ=255) cagACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTGATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGCTGGcc > 1:293083/1‑150 (MQ=255) ttCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGa < 1:209223/50‑1 (MQ=255) ttCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGa > 2:209223/1‑50 (MQ=255) tGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCGAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTGGGCACTAATGTTTCCGGATACGGGCACGGCGACCTGCTGGCCGGCTACCGCGAAATGCCACAAGCtgt < 1:110965/150‑1 (MQ=255) | AAACGCTGCACCAGGAAATCCAGCATGCTGCGCAAGGTCGCCGGCATGTGTTTGCGCGACGTATACACCGCATTCAGGTTCAGTTCACGCGGTTTGGCCTCAGGCAGCAGACGCAC‑CAGTTCACCCCGGCGTATGGCGTCTGCGGCCTGGTAGGTTGGCAGCATGGTGATACCTGCGCCAGCCAGCGCAGCCCTTTGCAGGGTCATCACCTCGTTGGCACTGATGTTTCCGGATACGGGCACGGCGACCTGCTGGCCGGCTACCGCGAAATGCCACAAGCTGT > NC_002947/1586576‑1586858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |