New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1896917 =	27 (1.160)	4 (0.180)	4/242	NT	14.4%	coding (199/318 nt)	sugE	transporter
	?	NC_002947	1896946 =	22 (0.990)					coding (170/318 nt)	sugE	transporter

CCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGA  >  NC_002947/1896770‑1897063                                                                                                                                                    |                                                                                                                                                   ccgccTGCGCGGCCCCCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTgcgc                                                                                                                                                  <  2:523039/150‑1 (MQ=255)           ggCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGt                                                                                                                                        >  1:22274/1‑150 (MQ=255)             cccTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGAAGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATCACCGTACCGACTGCTCCTACGCCGGAcc                                                                                                                                      >  2:208433/1‑150 (MQ=255)                tctGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGa                                                                                                                                   >  2:49223/1‑150 (MQ=255)                    cGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGc                                                                                                                               <  1:49223/150‑1 (MQ=255)                      aTAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCAt                                                                                                                             >  1:144124/1‑150 (MQ=255)                              tAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTg                                                                                                                     <  1:354759/150‑1 (MQ=255)                                      gcTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAgg                                                                                                                          <  2:85248/137‑1 (MQ=255)                                      gcTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAgg                                                                                                                          >  1:85248/1‑137 (MQ=255)                                        tGACTTTCAGGCCGACAAGGCCGCAGAAGGTCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCa                                                                                                           <  1:433365/150‑1 (MQ=255)                                                aGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTc                                                                                                   <  2:429792/150‑1 (MQ=255)                                                  gCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCAt                                                                                                 >  2:108778/1‑150 (MQ=255)                                                  gCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCAt                                                                                                 <  1:101729/150‑1 (MQ=255)                                                       cAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCca                                                                                            <  1:436164/150‑1 (MQ=255)                                                           gCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCcaggcc                                                                                        >  1:297399/1‑150 (MQ=255)                                                                  aCGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCcaggcccagcagg                                                                                 >  1:512239/1‑150 (MQ=255)                                                                    gATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCcaggcccagcaggcc                                                                               >  2:532942/1‑150 (MQ=255)                                                                              ttaccgtcggcgccatggtcatcagcctgggcctgctgggcctggccatgaaggaactgccgctgggcacCGCCTACGCCGGTCCAGATGGCATAGGCGGTg                                                                                                                     <  1:548027‑M1/32‑1 (MQ=255)                                                                              ttaccgtcggcgccatggtcatcagcctgggcctgctgggcctggccatgaaggaactgccgctgggcacCGCCTACGCCGGTCCAGATGGCATAGGCGGTg                                                                                                                     >  2:548027‑M1/71‑102 (MQ=255)                                                                                acTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGAc                                                                   <  2:144124/150‑1 (MQ=255)                                                                                        gCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGgcgc                                                           >  2:543433/1‑150 (MQ=255)                                                                                         gccatggtcatcagcctgggcctgctgggcctggccatgaaggaactgccgctgggcacCGCCTACGCCGGTCCAGATGGCATAGGc                                                                                                                         >  2:9380‑M1/60‑87 (MQ=255)                                                                                         gccatggtcatcagcctgggcctgctgggcctggccatgaaggaactgccgctgggcacCGCCTACGCCGGTCCAGATGGCATAGGc                                                                                                                         <  1:9380‑M1/28‑1 (MQ=255)                                                                                                  ggCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAg                                                 >  2:311426/1‑150 (MQ=255)                                                                                                                  aaCAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGt                                 >  2:535064/1‑150 (MQ=255)                                                                                                                      aaaTGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAg                             >  2:609738/2‑150 (MQ=255)                                                                                                                          gATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGaa                         <  1:311426/150‑1 (MQ=255)                                                                                                                           aTCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGaaa                        <  1:108778/150‑1 (MQ=255)                                                                                                                               cGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGt                    >  1:127552/1‑150 (MQ=255)                                                                                                                                 gCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCg                  <  1:208433/150‑1 (MQ=255)                                                                                                                                   gATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGgt                <  1:532942/150‑1 (MQ=255)                                                                                                                                            aCCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAg       <  1:543433/150‑1 (MQ=255)                                                                                                                                                 cTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGa  <  2:22274/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CCGCCTGCGCGGCCCTCTGCGATAGGGGTTAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGA  >  NC_002947/1896770‑1897063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.