New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1896917 =	27 (1.160)	4 (0.180)	4/242	NT	14.4%	coding (199/318 nt)	sugE	transporter
	?	NC_002947	1896946 =	22 (0.990)					coding (170/318 nt)	sugE	transporter

TAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGC  >  NC_002947/1896799‑1897087                                                                                                                                                    |                                                                                                                                              tAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTg                                                                                                                                             <  1:354759/150‑1 (MQ=255)           tGACTTTCAGGCCGACAAGGCCGCAGAAGGTCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCa                                                                                                                                   <  1:433365/150‑1 (MQ=255)                   aGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTc                                                                                                                           <  2:429792/150‑1 (MQ=255)                     gCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCAt                                                                                                                         >  2:108778/1‑150 (MQ=255)                     gCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCAt                                                                                                                         <  1:101729/150‑1 (MQ=255)                          cAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCca                                                                                                                    <  1:436164/150‑1 (MQ=255)                              gCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCcaggcc                                                                                                                >  1:297399/1‑150 (MQ=255)                                     aCGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCcaggcccagcagg                                                                                                         >  1:512239/1‑150 (MQ=255)                                       gATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCcaggcccagcaggcc                                                                                                       >  2:532942/1‑150 (MQ=255)                                                 ttaccgtcggcgccatggtcatcagcctgggcctgctgggcctggccatgaaggaactgccgctgggcacCGCCTACGCCGGTCCAGATGGCATAGGCGGTg                                                                                                                                             >  2:548027‑M1/71‑102 (MQ=255)                                                 ttaccgtcggcgccatggtcatcagcctgggcctgctgggcctggccatgaaggaactgccgctgggcacCGCCTACGCCGGTCCAGATGGCATAGGCGGTg                                                                                                                                             <  1:548027‑M1/32‑1 (MQ=255)                                                   acTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGAc                                                                                           <  2:144124/150‑1 (MQ=255)                                                           gCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGgcgc                                                                                   >  2:543433/1‑150 (MQ=255)                                                                     ggCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAg                                                                         >  2:311426/1‑150 (MQ=255)                                                                                     aaCAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGt                                                         >  2:535064/1‑150 (MQ=255)                                                                                         aaaTGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAg                                                     >  2:609738/2‑150 (MQ=255)                                                                                             gATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGaa                                                 <  1:311426/150‑1 (MQ=255)                                                                                              aTCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGaaa                                                <  1:108778/150‑1 (MQ=255)                                                                                                  cGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGt                                            >  1:127552/1‑150 (MQ=255)                                                                                                    gCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCg                                          <  1:208433/150‑1 (MQ=255)                                                                                                      gATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGgt                                        <  1:532942/150‑1 (MQ=255)                                                                                                               aCCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAg                               <  1:543433/150‑1 (MQ=255)                                                                                                                    caccgcctatgccatctggaccggcgtaggcgGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTaa                                                                          >  2:548027‑M2/33‑102 (MQ=255)                                                                                                                    caccgcctatgccatctggaccggcgtaggcgGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTaa                                                                          <  1:548027‑M2/70‑1 (MQ=255)                                                                                                                    cTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGa                          <  2:22274/150‑1 (MQ=255)                                                                                                                        gcctatgccatctggaccggcgtaggcgGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGgc                                                                                     >  2:9380‑M2/29‑87 (MQ=255)                                                                                                                        gcctatgccatctggaccggcgtaggcgGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGgc                                                                                     <  1:9380‑M2/59‑1 (MQ=255)                                                                                                                                      ggATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCGCGa        >  2:243601/2‑150 (MQ=255)                                                                                                                                       gATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGaa       <  1:67870/150‑1 (MQ=255)                                                                                                                                          ggCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCATCCGACCGCGAACAg    <  2:275002/150‑1 (MQ=255)                                                                                                                                            cATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGc  >  2:467509/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                              TAGCTGGCGCTGACTTTCAGGCCGACAAGGCCGCAGACGATCAGCGCCACACTGACCAGCCGCACCAGGGCCATGGACTCGCCGAACAGAATGATCCCGGCGATGACCGTACCGACTGCGCCTACGCCGGTCCAGATGGCATAGGCGGTGCCCAGCGGCAGTTCCTTCATGGCCAGGCCCAGCAGGCCCAGGCTGATGACCATGGCGCCGACGGTAAGGACAGTGGGTAGCGGTCGAGTGAAACCGTCGGTGTATTTGAGGCCGACGGCCCAGCCGACCTCGAACAGGC  >  NC_002947/1896799‑1897087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.