| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2059626 = | 15 (0.640) | 3 (0.140) | 3/236 | NT | 19.4% | intergenic (+17/+107) | PP_1835/PP_1836 | hypothetical protein/ZIP family metal transporter |
| ? | NC_002947 | 2059707 = | 11 (0.510) | intergenic (+98/+26) | PP_1835/PP_1836 | hypothetical protein/ZIP family metal transporter | |||||
TGCTCGATGACGAGCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAACATC > NC_002947/2059479‑2059760 | tGCTCGATGACGAGCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTc < 1:519033/150‑1 (MQ=255) gAGCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGcc > 1:382463/1‑150 (MQ=255) cacgaggtgatccccgaaacccaccgcaacgggcaccagacagcggcgaccctggggttgatgggcgggtttgcggtgatgatgtttctcgacactgcgccgggctgaagattgatgtttcgtgagccggcctcTTCGCgg > 2:384909‑M1/135‑141 (MQ=255) cacgaggtgatccccgaaacccaccgcaacgggcaccagacagcggcgaccctggggttgatgggcgggtttgcggtgatgatgtttctcgacactgcgccgggctgaagattgatgtttcgtgagccggcctcTTCGCgg < 1:384909‑M1/7‑1 (MQ=255) tGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCa < 1:83351/150‑1 (MQ=255) tGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCtgt < 2:512040/150‑1 (MQ=255) tGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCtgt < 2:389610/150‑1 (MQ=255) tGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCt > 1:287835/1‑148 (MQ=255) tGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCt < 2:287835/148‑1 (MQ=255) ttGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCCgg < 1:610163/111‑1 (MQ=255) ttGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAgg > 2:610163/1‑111 (MQ=255) cctggggttgatgggcgggtttgcggtgatgatgtttctcgacactgcgctgggctgaagattgatgtttcgtgagccggcctcTTCGCGGGCATGCCCGCTCCCTCCGGTACTCCACTGGCACATGCCCTGTGATAACCCTGTGGGAGc > 1:172426‑M1/85‑150 (MQ=255) gAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGTTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCggg < 2:30197/150‑1 (MQ=255) cAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGa < 1:178369/150‑1 (MQ=255) tGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATCCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGATCCcgc > 2:206222/1‑150 (MQ=255) gCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGaa > 1:116476/1‑150 (MQ=255) tttcttgacactgcgctgggctgaagattgatgtttcgtgagccggcctcTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCtgtg < 2:330343‑M1/61‑1 (MQ=255) tttctcgacactgcgctgggctgaagattgatgtttcgtgagccggcctcTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCtgtg > 1:330343‑M1/51‑111 (MQ=255) gAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCaa > 1:69119/1‑150 (MQ=255) aGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAAt < 2:382463/150‑1 (MQ=255) tACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCACGTAATCCAGCGCATCAGGCCTTGTGATAACCCTGTGGCAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAAcat < 1:291918/150‑1 (MQ=255) cTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAAcatc > 2:19585/1‑139 (MQ=255) cTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAAcatc < 1:19585/139‑1 (MQ=255) | TGCTCGATGACGAGCTGCAGATGGTCATGGTGGGGCAGCAGGACCTGGCGCGGGTAATGGAGTTGGGAGCAGAGCTGGGCATCAAGGTCGAGCCGGCGCTGGAGGCTTTGAAAGTCGCCGTCCACATCTGATACCAGTGATTGCTTGTTCGCGGGCATGCCCGCTCCCTCAGGTACTCCAGCGCATCAGGCCCTGTGATAACCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCTCACGAAACATCAATCTTCAGCCCAGCGCAGTGTCGAGAAACATC > NC_002947/2059479‑2059760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |