New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2279206 =	11 (0.470)	5 (0.230)	4/240	NT	29.1%	coding (303/2082 nt)	fadH	2,4‑dienoyl‑CoA reductase
	?	NC_002947	2279232 =	14 (0.640)					coding (329/2082 nt)	fadH	2,4‑dienoyl‑CoA reductase

CGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGTTCAAGCCCAAAGAGCT  >  NC_002947/2279062‑2279352                                                                                                                                                 |                                                                                                                                                   gcttctcgatgcccgcctcatccagctctttgggcttgaacgggttgatcggcgcctggatcgcgctaggtgccacctgccgtgggctgtaggcgtagcgcccggcatgcagtatctgcaggcagatcttgccaccggcagcgtGCACCg                                                                                                                                               <  1:176133‑M1/6‑1 (MQ=255)                                  gcgcgcCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCACAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTgg                                                                                                              <  1:295010/150‑1 (MQ=255)                                       cccGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGa                                                                                                         <  2:265713/150‑1 (MQ=255)                                        ccGGGGCGGCGTTGACCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACAGAGGAAGGGGCCGAAAAGCACCGCATCGTCCGCGAGGCGGGGCGCGCTGCCGGGGGCgagag                                                                                                        >  2:103037/1‑149 (MQ=255)                                          gggcctgcgTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAATGCGGGGTGTATTCCGGTGCGGCAAAGCTCATCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATct                                                                                                      <  1:19978/144‑1 (MQ=255)                                            gttgatcggcgcctggatcgcgctaggtgccacctgccgtgggctgtaggcgtagcgcccggcatgcagtatctgcaggcagatcttgccaccggcagcgtGCACCGCATCGTCACCGAGGCGGt                                                                                                                             >  1:555131‑M1/102‑125 (MQ=255)                                            gttgatcggcgcctggatcgcgctaggtgccacctgccgtgggctgtaggcgtagcgcccggcatgcagtatctgcaggcagatcttgccaccggcagcgtGCACCGCATCGTCACCGAGGCGGt                                                                                                                             <  2:555131‑M1/24‑1 (MQ=255)                                                               tCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCa                                                                                      >  1:292560/1‑145 (MQ=255)                                                               tCACGGGCGGCATTGCGCCAAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCa                                                                                      <  2:292560/145‑1 (MQ=255)                                                                                                   tgtATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCa                                                 >  1:278206/1‑146 (MQ=255)                                                                                                   tgtATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCa                                                 <  2:278206/146‑1 (MQ=255)                                                                                                      ccggcatgcagtatctgcaggcagatcttgccaccggcagcgtGCACCGCATCGTCACCGAGGCGGt                                                                                                                             >  1:290205‑M1/44‑67 (MQ=255)                                                                                                      ccggcatgcagtatctgcaggcagatcttgccaccggcagcgtGCACCGCATCGTCACCGAGGCGGt                                                                                                                             <  2:290205‑M1/24‑1 (MQ=255)                                                                                                                     aGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGa                           >  1:559923/1‑150 (MQ=255)                                                                                                                            cACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGa                           <  1:335969/143‑1 (MQ=255)                                                                                                                            cACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGa                           >  2:335969/1‑143 (MQ=255)                                                                                                                              atcttgccaccggcagcgtGCACCGCCTCGGTGACGATGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGt                  <  2:176133‑M1/131‑1 (MQ=255)                                                                                                                                              cAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGTTCAAGCCCAAAGAGCt  <  2:559923/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   CGGCTTCGAGCGCATGGCAGCTTACTTTGCCGAGCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGTTCAAGCCCAAAGAGCT  >  NC_002947/2279062‑2279352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.