New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2279206 =	11 (0.470)	5 (0.230)	4/240	NT	29.1%	coding (303/2082 nt)	fadH	2,4‑dienoyl‑CoA reductase
	?	NC_002947	2279232 =	14 (0.640)					coding (329/2082 nt)	fadH	2,4‑dienoyl‑CoA reductase

GCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGTTCAAGCCCAAAGAGCTGGATGAGGCGGGCATCGAGAAGC  >  NC_002947/2279095‑2279375                                                                                                                                          |                                                                                                                                                gcgcgcCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCACAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTgg                                                                                                                                     <  1:295010/150‑1 (MQ=255)      cccGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGa                                                                                                                                <  2:265713/150‑1 (MQ=255)       ccGGGGCGGCGTTGACCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACAGAGGAAGGGGCCGAAAAGCACCGCATCGTCCGCGAGGCGGGGCGCGCTGCCGGGGGCgagag                                                                                                                               >  2:103037/1‑149 (MQ=255)       acgggttgatcggcgcctggatcgcgctaggtgccacctgccgtgggctgtaggcgtagcgcccggcatgcagtatctgcaggcagatcttgccaccggcagcgtgcaccgcatcgtcaccgaggcggtgcACGCTGCCGGTGGCAAGAt                                                                                                                               <  2:176133‑M2/19‑1 (MQ=255)         gggcctgcgTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAATGCGGGGTGTATTCCGGTGCGGCAAAGCTCATCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATct                                                                                                                             <  1:19978/144‑1 (MQ=255)                              tCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCa                                                                                                             >  1:292560/1‑145 (MQ=255)                              tCACGGGCGGCATTGCGCCAAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCa                                                                                                             <  2:292560/145‑1 (MQ=255)                                                                  tgtATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCa                                                                        >  1:278206/1‑146 (MQ=255)                                                                  tgtATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCa                                                                        <  2:278206/146‑1 (MQ=255)                                                                                    aGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGa                                                  >  1:559923/1‑150 (MQ=255)                                                                                           cACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGa                                                  <  1:335969/143‑1 (MQ=255)                                                                                           cACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGa                                                  >  2:335969/1‑143 (MQ=255)                                                                                             atcttgccaccggcagcgtGCACCGCCTCGGTGACGATGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGt                                         <  2:176133‑M1/131‑1 (MQ=255)                                                                                                             cAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGTTCAAGCCCAAAGAGCt                         <  2:559923/150‑1 (MQ=255)                                                                                                                  accgcctcggtgacgatgcggtgcACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCgg                                                                                                       >  1:290205‑M2/25‑67 (MQ=255)                                                                                                                  accgcctcggtgacgatgcggtgcACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCgg                                                                                                       <  2:290205‑M2/43‑1 (MQ=255)                                                                                                                  accgcctcggtgacgatgcggtgcACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAAc                                             >  1:555131‑M2/25‑125 (MQ=255)                                                                                                                  accgcctcggtgacgatgcggtgcACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAAc                                             <  2:555131‑M2/101‑1 (MQ=255)                                                                                                                             aCCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTgg                                                                          <  2:424604/85‑1 (MQ=255)                                                                                                                             aCCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTgg                                                                          >  1:424604/1‑85 (MQ=255)                                                                                                                                  ggCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGTTCAAGCCCAAAGAGCTGGATGAGGCGGGCATCGAGaa    >  1:203588/1‑150 (MQ=255)                                                                                                                                    cggtgcACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGTTCAAGCCCAAAGAGCTGGATGAGGCGGGCATCGAGAAGc  <  1:176133‑M2/144‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                GCGCGCCCGGGGCGGCGTTGGCCTGATGGTCACGGGCGGCATTGCGCCCAATGATGAAGGCGGGGTGTATTCCGGTGCGGCAAAGCTCAGCACCGAGGAAGAGGCCGACAAGCACCGCATCGTCACCGAGGCGGTGCACGCTGCCGGTGGCAAGATCTGCCTGCAGATACTGCATGCCGGGCGCTACGCCTACAGCCCACGGCAGGTGGCACCTAGCGCGATCCAGGCGCCGATCAACCCGTTCAAGCCCAAAGAGCTGGATGAGGCGGGCATCGAGAAGC  >  NC_002947/2279095‑2279375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.