New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5561207	30 (1.290)	4 (0.180)	4/242	NT	10.9%	coding (512/870 nt)	hflC	integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	= 5561224	37 (1.670)					coding (495/870 nt)	hflC	integral membrane ATP‑dependent zinc metallopeptidase

GCAGCACACGGCGCTGACGGTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTGGTCGCG  >  NC_002947/5561064‑5561349                                                                                                                                                |                                                                                                                                                 gcagcaCACGGCGCTGACGGTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑Ct                                                                                                                                          <  1:111748/150‑1 (MQ=255)        acGGCGCTGACGGTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGAcgcg                                                                                                                                   <  1:407575/150‑1 (MQ=255)                  cGGTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGtcgacc                                                                                                                         >  1:303311‑M2/1‑144 (MQ=255)                    gTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGAACGTCGaccac                                                                                                                       <  2:305752/150‑1 (MQ=255)                          atcggcaCGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGAt                                                                                                                 <  1:414941/150‑1 (MQ=255)                              gcaCGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGccc                                                                                                             >  1:24271/1‑150 (MQ=255)                                  ggATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGtt                                                                                                         <  2:24271/150‑1 (MQ=255)                                        ccTCAGCCAGCTCGTTACCCTTGTCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTTCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCAATGCCCAGCTCCTTGc                                                                                                   >  1:377532/1‑150 (MQ=255)                                        ccTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGAcgtgcgcgtcaaggccatcgacctgccgaag                                                                                                                   <  2:379064‑M1/136‑32 (MQ=255)                                        ccTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGAcgtgcgcgtcaaggccatcgacctgccgaag                                                                                                                   >  1:379064‑M1/1‑105 (MQ=255)                                        ccTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGc                                                                                                   >  2:143460/1‑150 (MQ=255)                                                agcTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATg                                                                                           >  1:189822/1‑150 (MQ=255)                                                agcTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGACGTGCGCGTCAAG‑GC‑CAtcgacctgccgaaggaagtcaaccgcagcgtgttcg                                                                                           <  1:410197‑M2/150‑37 (MQ=255)                                                   tCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGa                                                                                        >  1:366335/1‑150 (MQ=255)                                                     gTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGACG‑TG‑CGCGTCAAGGCCAtcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgc                                                                                      >  2:410197‑M2/1‑109 (MQ=255)                                                      ttACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTc                                                                                     >  2:419608/1‑150 (MQ=255)                                                               gCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCa                                                                            <  1:574498/150‑1 (MQ=255)                                                                 aCGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGt                                                                          >  1:55175/1‑150 (MQ=255)                                                                         cgcgGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCATCGATGCAGTGATGTCAg                                                                  <  2:55175/150‑1 (MQ=255)                                                                                ttCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCCATCGCATCCCGTCGGCAGTTCGATG‑GC‑CTTGAACTGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAg                                                           <  1:138624/150‑1 (MQ=255)                                                                                 tcacgctcacgcTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGt                                                          <  1:109156/150‑1 (MQ=255)                                                                                     gctcacgctcGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCAt                                                      >  1:79546/1‑150 (MQ=255)                                                                                         acgctcGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACg                                                  <  1:554087/150‑1 (MQ=255)                                                                                                        gCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGAtggccttgacgcgcacgtcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgcatgagcaccgagcgtgagcgtgaagcccgcgagcaccgtgccaagggtaac                                     >  2:410197‑M1/1‑41 (MQ=255)                                                                                                           gTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTc                                <  1:419608/150‑1 (MQ=255)                                                                                                             cGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGAtggccttgacgcgcacgtcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgcatgagcaccgagcgtgagcgtgaagcccgcgagcaccgtgccaagggtaacgagct                                <  1:410197‑M1/150‑115 (MQ=255)                                                                                                             cGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTTACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGt                              <  2:189822/150‑1 (MQ=255)                                                                                                                 cacGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAg                          <  2:366335/150‑1 (MQ=255)                                                                                                                  acGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAgg                         >  1:420962/1‑150 (MQ=255)                                                                                                                    gCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGt                       >  2:599683/1‑150 (MQ=255)                                                                                                                        cGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGt                   <  1:143460/150‑1 (MQ=255)                                                                                                                            tcaCTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTAc               <  1:76153/148‑1 (MQ=255)                                                                                                                               cttccttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGc                                                        <  1:309160/106‑1 (MQ=255)                                                                                                                               cttccttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGc                                                        >  2:309160/1‑106 (MQ=255)                                                                                                                                ttccttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCAcc                                            <  2:83018/117‑1 (MQ=255)                                                                                                                                ttccttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCAcc                                            >  1:83018/1‑117 (MQ=255)                                                                                                                                   cttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGtcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgcatgagcaccgagcgtgagcgtgaagcccgcgagcaccgtgccaagggtaacgagctggctgagg                      <  2:379064‑M2/136‑106 (MQ=255)                                                                                                                                   cttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGtcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgcatgagcaccgagcgtgagcgtgaagcccgcgagcaccgtgccaagggtaacgagctggctgagg                      >  1:379064‑M2/1‑31 (MQ=255)                                                                                                                                   cttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCAACAGTGCAGCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTg        <  2:544258/150‑1 (MQ=255)                                                                                                                                           ggTCGAcgtgcgcgtcaaggccatcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgcatgagcaccgagcgtgagcgtgaagcccgcgagcaccgtgccaagggtaacgagctggctgagggtatccgtgccgatgccgaccg  >  1:303311‑M1/1‑6 (MQ=255)                                                                                                                                            gTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAg                          >  1:270481/1‑123 (MQ=255)                                                                                                                                            gTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAg                          <  2:270481/123‑1 (MQ=255)                                                                                                                                                aTG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCACTGATGGCTGACATCACTga                                                        >  1:442436/1‑88 (MQ=38)                                                                                                                                                |                                                                                                                                                 GCAGCACACGGCGCTGACGGTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTGGTCGCG  >  NC_002947/5561064‑5561349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.