New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5561207	30 (1.290)	4 (0.180)	4/242	NT	10.9%	coding (512/870 nt)	hflC	integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	= 5561224	37 (1.670)					coding (495/870 nt)	hflC	integral membrane ATP‑dependent zinc metallopeptidase

CGGTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTGGTCGCGCAGGCCACTTTCCAGAC  >  NC_002947/5561081‑5561366                                                                                                                                                  |                                                                                                                                               cGGTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGtcgacc                                                                                                                                          >  1:303311‑M2/1‑144 (MQ=255)   gTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGAACGTCGaccac                                                                                                                                        <  2:305752/150‑1 (MQ=255)         atcggcaCGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGAt                                                                                                                                  <  1:414941/150‑1 (MQ=255)             gcaCGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGccc                                                                                                                              >  1:24271/1‑150 (MQ=255)                 ggATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGtt                                                                                                                          <  2:24271/150‑1 (MQ=255)                       ccTCAGCCAGCTCGTTACCCTTGTCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTTCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCAATGCCCAGCTCCTTGc                                                                                                                    >  1:377532/1‑150 (MQ=255)                       ccTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGc                                                                                                                    >  2:143460/1‑150 (MQ=255)                               agcTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATg                                                                                                            >  1:189822/1‑150 (MQ=255)                               agcTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGACGTGCGCGTCAAG‑GC‑CAtcgacctgccgaaggaagtcaaccgcagcgtgttcg                                                                                                            <  1:410197‑M2/150‑37 (MQ=255)                                  tCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGa                                                                                                         >  1:366335/1‑150 (MQ=255)                                    gTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGACG‑TG‑CGCGTCAAGGCCAtcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgc                                                                                                       >  2:410197‑M2/1‑109 (MQ=255)                                     ttACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTc                                                                                                      >  2:419608/1‑150 (MQ=255)                                              gCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCa                                                                                             <  1:574498/150‑1 (MQ=255)                                                aCGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGt                                                                                           >  1:55175/1‑150 (MQ=255)                                                        cgcgGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCATCGATGCAGTGATGTCAg                                                                                   <  2:55175/150‑1 (MQ=255)                                                               ttCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCCATCGCATCCCGTCGGCAGTTCGATG‑GC‑CTTGAACTGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAg                                                                            <  1:138624/150‑1 (MQ=255)                                                                tcacgctcacgcTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGt                                                                           <  1:109156/150‑1 (MQ=255)                                                                    gctcacgctcGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCAt                                                                       >  1:79546/1‑150 (MQ=255)                                                                        acgctcGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACg                                                                   <  1:554087/150‑1 (MQ=255)                                                                                          gTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTc                                                 <  1:419608/150‑1 (MQ=255)                                                                                            cGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTTACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGt                                               <  2:189822/150‑1 (MQ=255)                                                                                                cacGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAg                                           <  2:366335/150‑1 (MQ=255)                                                                                                 acGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAgg                                          >  1:420962/1‑150 (MQ=255)                                                                                                   gCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGt                                        >  2:599683/1‑150 (MQ=255)                                                                                                       cGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGt                                    <  1:143460/150‑1 (MQ=255)                                                                                                           tcaCTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTAc                                <  1:76153/148‑1 (MQ=255)                                                                                                              cttccttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGc                                                                         <  1:309160/106‑1 (MQ=255)                                                                                                              cttccttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGc                                                                         >  2:309160/1‑106 (MQ=255)                                                                                                               ttccttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCAcc                                                             <  2:83018/117‑1 (MQ=255)                                                                                                               ttccttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCAcc                                                             >  1:83018/1‑117 (MQ=255)                                                                                                                  cttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGtcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgcatgagcaccgagcgtgagcgtgaagcccgcgagcaccgtgccaagggtaacgagctggctgagg                                       <  2:379064‑M2/136‑106 (MQ=255)                                                                                                                  cttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGtcgacctgccgaaggaagtcaaccgcagcgtgttcgaccgcatgagcaccgagcgtgagcgtgaagcccgcgagcaccgtgccaagggtaacgagctggctgagg                                       >  1:379064‑M2/1‑31 (MQ=255)                                                                                                                  cttcGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCAACAGTGCAGCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTg                         <  2:544258/150‑1 (MQ=255)                                                                                                                           gTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAg                                           >  1:270481/1‑123 (MQ=255)                                                                                                                           gTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAg                                           <  2:270481/123‑1 (MQ=255)                                                                                                                               aTG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCACTGATGGCTGACATCACTga                                                                         >  1:442436/1‑88 (MQ=38)                                                                                                                                   gC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTGGTCGCGCAGGCCACtt         <  2:592271/150‑1 (MQ=255)                                                                                                                                       ttGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTGGTCGCGCAGGCCACTTTcc      >  1:200018/1‑150 (MQ=255)                                                                                                                                         gACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTAc                                >  2:369546/1‑122 (MQ=255)                                                                                                                                         gACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTAc                                <  1:369546/122‑1 (MQ=255)                                                                                                                                          aCGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTg                         <  1:237619/128‑1 (MQ=255)                                                                                                                                          aCGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTg                         >  2:237619/1‑128 (MQ=255)                                                                                                                                           cgcgCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTGGTCGCGCAGGCCACTTTCCAgac  <  1:599683/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               CGGTCGGCATCGGCACGGATACCCTCAGCCAGCTCGTTACCCTTGGCACGGTGCTCGCGGGCTTCACGCTCACGCTCGGTGCTCATGCGGTCGAACACGCTGCGGTTGACTTCCTTCGGCAGGTCGATG‑GC‑CTTGACGCGCACGTCGACCACCTCGATGCCCAGTTCCTTGCTCGCCATGCGATTCAGCGATGCAGTGATGTCAGCCATCAGTGCATCACGTTCACCGGAAACCACTTCGTGCAGGGTACGTTTACCGAACTGGTCGCGCAGGCCACTTTCCAGAC  >  NC_002947/5561081‑5561366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.