New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 12249	35 (1.500)	8 (0.360)	6/240	NT	18.4%	coding (28/1104 nt)	recF	DNA replication/repair protein
	?	NC_002947	= 12267	38 (1.730)					coding (46/1104 nt)	recF	DNA replication/repair protein

TGATCTTGTCCGATTCAAACAGCAGTGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCCGTTCATTTCGCAGCACCCGCCTGAATCCGGTTATTCA  >  NC_002947/12118‑12406                                                                                                                                                        |                                                                                                                                            tGATCTTGTCCGATTCAAACAGCAGTGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑Acc                                                                                                                                             >  1:51550/1‑150 (MQ=255)             aTTCAAACAGCAGTGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACActct                                                                                                                                 >  1:556626/1‑150 (MQ=255)             aTTCAAACAGCAGTGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTGGC‑‑ACCCTGTGCCActct                                                                                                                                 >  2:494831/1‑150 (MQ=255)               tCAAACAGCAGTGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTa                                                                                                                               <  1:244418/150‑1 (MQ=255)                       cagTGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCcggt                                                                                                                                         <  1:33684‑M2/132‑5 (MQ=255)                       cagTGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCcggt                                                                                                                                         >  2:33684‑M2/1‑128 (MQ=255)                          tGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCG‑GGTGC‑‑AAGTTGCGCACCgcggtgaccatgatacgtcgaaggga                                                                                                                   >  2:574314‑M2/1‑124 (MQ=255)                              ctgctgCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATc                                                                                                                >  2:234463/1‑150 (MQ=255)                                 ctgcAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGTAACTTGC‑‑ACCCGGTGACACTCTGACGCTCCCCCCGCATCAAc                                                                                                             <  2:331298/150‑1 (MQ=255)                                    cAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATc                                                                                                          <  2:326225/150‑1 (MQ=255)                                    cAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATc                                                                                                          <  2:326266/150‑1 (MQ=255)                                       gAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCtt                                                                                                       <  2:80813/150‑1 (MQ=255)                                           cTGGCAATGACGATTCTTCGTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACg                                                                                                   <  2:402213/150‑1 (MQ=255)                                              gCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATc                                                                                                                >  1:33832/1‑134 (MQ=255)                                              gCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATc                                                                                                                <  2:33832/134‑1 (MQ=255)                                               cAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGgcgc                                                                                               >  2:471538/1‑150 (MQ=255)                                                    aCGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACg                                                                                          >  1:45540/1‑150 (MQ=255)                                                      gATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCcggtgac                                                                                                                                      >  1:497853‑M2/1‑97 (MQ=255)                                                      gATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCcggtgac                                                                                                                                      <  2:497853‑M2/104‑8 (MQ=255)                                                      gATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCcggt                                                                                                                                         >  2:519635‑M2/1‑97 (MQ=255)                                                      gATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCcggt                                                                                                                                         <  1:519635‑M2/101‑5 (MQ=255)                                                         tcttcCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGc                                                                                     <  2:45540/150‑1 (MQ=255)                                                              cTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCaa                                                                                <  2:51550/150‑1 (MQ=255)                                                              cTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCaa                                                                                <  2:556626/150‑1 (MQ=255)                                                              cTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGAGCCAACGGCAGCGGCaa                                                                                >  1:539643/1‑150 (MQ=255)                                                               tACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAAc                                                                                           <  1:40292/138‑1 (MQ=255)                                                               tACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAAc                                                                                           >  2:40292/1‑138 (MQ=255)                                                               tACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAg                                                                               >  1:421917/1‑150 (MQ=255)                                                                                         aCCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCAttt                                                     >  1:315027/1‑150 (MQ=255)                                                                                           cTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGc                                                   >  1:425862/1‑150 (MQ=255)                                                                                            tGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCt                                                  >  1:402568/1‑150 (MQ=255)                                                                                              tAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCg                                                <  2:259699/150‑1 (MQ=255)                                                                                                  aGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGa                                                                              >  1:174348/1‑116 (MQ=255)                                                                                                  aGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGa                                                                              <  2:174348/116‑1 (MQ=255)                                                                                                  aGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCg                                                >  2:535252/1‑146 (MQ=255)                                                                                                  aGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCg                                                <  1:535252/146‑1 (MQ=255)                                                                                                   ggCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTg                                           >  2:608639/1‑150 (MQ=255)                                                                                                            tCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCCGTTCa                                  >  2:281646/1‑150 (MQ=255)                                                                                                                    aCGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACTCGGTGACACTCTTGCCCTCCCCCCGCATCAACATCCTTTCCGGCGCCAACCGGAGCGGCAAGACCCGCGTGCTTGACGCCGTGCATTTGCTTGGGCTGGCCCGTTCATTTCgcag                          <  1:514212/150‑1 (MQ=255)                                                                                                                       tATCATGGTCACCGCCGCGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCGCGGGCTGGCCCGTTCATTTCGCAGCAc                       <  2:281100/150‑1 (MQ=255)                                                                                                                        aTCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGAGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCCGTTCATTTCGCAGCAcc                      <  2:539643/150‑1 (MQ=255)                                                                                                                           aTGGTCACCGCGGTGCGCAACTTGC‑‑ACCcggtgaccatgatacgtcgaagggacatttcgcctgctacaggttacaggcgcatcggcatgacaac                                                                          <  1:525424‑M2/95‑68 (MQ=255)                                                                                                                           aTGGTCACCGCGGTGCGCAACTTGC‑‑ACCcggtgaccatgatacgtcgaagggacatttcgcctgctacaggttacaggcgcatcggcatgacaac                                                                          >  2:525424‑M2/1‑28 (MQ=255)                                                                                                                               tCACCGCGGTGCGCAACTTGC‑‑ACCcggtgaccatgatacgtcgaagggacatttcgcctgctacaggttacaggcgcatcggcatgacaacgtaggaagaatcgtcattgccagcttcctgcagcagcgcactgctgtttgaatcggaca               <  1:264238‑M2/150‑127 (MQ=255)                                                                                                                               tCACCGCGGTGCGCAACTTGC‑‑ACCcggtgaccatgatacgtcgaagggacatttcgcctgctacaggttacaggcgcatcggcatgacaacgtaggaagaatcgtcattgccagcttcctgcagcagcgcactgctgtttgaatcggaca               <  1:363274‑M2/150‑127 (MQ=255)                                                                                                                               tCACCGCGGTGCGCAACTTGC‑‑ACCcggtgaccatgatacgtcgaagggacatttcgcctgctacaggttacaggcgcatcggcatgacaacgtaggaagaatcgtcattgccagcttcctgca                                          >  2:153981‑M2/1‑24 (MQ=255)                                                                                                                               tCACCGCGGTGCGCAACTTGC‑‑ACCcggtgaccatgatacgtcgaagggacatttcgcctgctacaggttacaggcgcatcggcatgacaacgtaggaagaatcgtcattgccagcttcctgca                                          <  1:153981‑M2/123‑100 (MQ=255)                                                                                                                                 aCCGCGGTGCGCAACTTGC‑‑ACCcggtgaccatgatacgtcgaagggacatttcgcctgctacaggttacaggcgcatcggcatgacaacgtaggaagaatcgtcattgccagcttcctgcagcagcgcactgctgtttgaatcggacaag             >  2:363274‑M2/1‑22 (MQ=255)                                                                                                                                  ccGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCCGTTCATTTCGCAGCACCCGCCTGAATc            <  2:421917/150‑1 (MQ=255)                                                                                                                                     cgGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCCGTTCATTTCGCAGCACCCGCCTGAATCCgg         <  2:315027/150‑1 (MQ=255)                                                                                                                                      ggTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCCGTTCATTTCGCAGCACCCGCCTGAATCCGGt        <  2:545563/150‑1 (MQ=255)                                                                                                                                            cAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCGGTTCATTTCGCAGCACCCGCCTGAATCCGGTTATTCa  <  1:494831/150‑1 (MQ=255)                                                                                                                                            cAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCCGTTCATTTCGCAGCACCCGCCTGAATCCGGTTATTCa  >  1:457263/1‑150 (MQ=255)                                                                                                                                            cAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGACAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGc                                             <  2:581301/107‑1 (MQ=255)                                                                                                                                            cAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGACAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGc                                             >  1:581301/1‑107 (MQ=255)                                                                                                                                                        |                                                                                                                                            TGATCTTGTCCGATTCAAACAGCAGTGCGCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCGATGCGCCTGTAACCTGTAGCAGGCGAAATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACTTGC‑‑ACCCGGTGACACTCTTACCCTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAGACCAGCGTGCTTGAAGCCGTGCATTTGCTCGGGCTGGCCCGTTCATTTCGCAGCACCCGCCTGAATCCGGTTATTCA  >  NC_002947/12118‑12406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.