New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 292192	35 (1.500)	4 (0.180)	4/238	NT	11.6%	coding (573/966 nt)	ssuA	aliphatic sulfonatesABC transporter substrate‑binding protein
	?	NC_002947	= 292237	28 (1.280)					coding (618/966 nt)	ssuA	aliphatic sulfonatesABC transporter substrate‑binding protein

GACATCCAGCCTGTCTACCTGCCGCCGGCCGACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGAGGAAGTGCGCGCTGTGGGTGAGTGGTCCCAGGCCAACCCGCAGG  >  NC_002947/292097‑292364                                                                                                                                             |                                                                                                                                gACATCCAGCCGGTCTACCTGCCGCCGGCCGACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTc                                                                                                                        <  1:61247/150‑1 (MQ=255)     tCCAGCCTGTCTACCTGCCGCCGGCCGACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGTTGCAATCTCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACa                                                                                                                    <  1:319644/150‑1 (MQ=255)           cTGTCTACCTGCCGCCGGCCGCCGCCGGCAAACCATTCGAACCCGCCTGCAGGACCGCCTGGATGATCTCGGAGCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCACACCCTAAGTGACTGCAAGGGCCTGGTCGACAaccacc                                                                                                              >  1:565129/1‑150 (MQ=255)                    tGCCGCCGGCCGACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTAcc                                                                                                     >  1:70751/1‑150 (MQ=255)                      ccgccgGCCGACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTc                                                                                                   <  1:519676/150‑1 (MQ=255)                      ccgccgGCCGACGCCCGCGCCGCCTGCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCCAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTc                                                                                                   <  2:565129/150‑1 (MQ=255)                          cggccgACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCa                                                                                               <  1:110535/150‑1 (MQ=255)                              cgACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCt                                                                                                        >  1:127649/1‑137 (MQ=255)                              cgACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCt                                                                                                        <  2:127649/137‑1 (MQ=255)                                       cgccgcCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGc                                                                                  <  1:404333/150‑1 (MQ=255)                                       cgccgcCTTCGAGCGCGGCAGCGTGGATGCCGGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCGGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGc                                                                                  <  1:242826/150‑1 (MQ=255)                                          cgccTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTCAGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGac                                                                               <  1:159524/150‑1 (MQ=255)                                           gccTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGaca                                                                              <  1:184416/150‑1 (MQ=255)                                                  aGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCAcc                                                                       <  1:539178/150‑1 (MQ=255)                                                  aGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCAcc                                                                       <  1:523366/150‑1 (MQ=255)                                                         cAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTc                                                                                                   <  1:40374/115‑1 (MQ=255)                                                         cAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTc                                                                                                   >  2:40374/1‑115 (MQ=255)                                                           gCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGa                                                              <  1:133856/150‑1 (MQ=255)                                                           gCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGa                                                              <  2:41404/150‑1 (MQ=255)                                                                 aTGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAaca                                                        <  2:543699/150‑1 (MQ=255)                                                                   tccTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTACGTGAGGGCAAGGACCTGGTCGCCAACCGCCAGTTCTTCCTTGTGACCCGCAAATTAGTGATACAGCACCCGGTGGTGATTAACAcc                                                      >  2:188115/2‑150 (MQ=255)                                                                           gATCTGTGCCCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGa                                              <  2:234947/150‑1 (MQ=255)                                                                                     cccTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGAGGAAGTgcgc                                    >  2:58960/1‑150 (MQ=255)                                                                                       cTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGggcctggtaggggtcccagatcacccaggcatccacgctgccgcgctcgaaggcggcgcg                                                                     <  1:546745‑M2/115‑61 (MQ=255)                                                                                       cTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGggcctggtaggggtcccagatcacccaggcatccacgctgccgcgctcgaaggcggcgcg                                                                     >  2:546745‑M2/1‑55 (MQ=255)                                                                                        tACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGggcctggtaggggtcccagatcacccaggcatccacgctgccgcgctcgaaggcggcgcgggcgtcggccggcggcaggtagacaggctggatgtc                                 <  1:573457‑M2/150‑97 (MQ=255)                                                                                           cAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGAGGAAGTGCGCGCtgtg                              >  2:514256/1‑150 (MQ=255)                                                                                           cAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGAGGAAGTGCGCGCtgtg                              <  2:70751/150‑1 (MQ=255)                                                                                                cgccgccgAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAaca                                                        <  1:567571/119‑1 (MQ=255)                                                                                                cgccgccgAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAaca                                                        >  2:567571/1‑119 (MQ=255)                                                                                                cgccgccgAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGAGGAAGTGCGCGCTGTGGGTGa                         <  2:45530/150‑1 (MQ=255)                                                                                                   cgccgAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGggcctggtaggggtcccagatcacccaggcatccacgctgccgcgctcgaaggcggcgcgggcgtcggccggcggcaggtagacaggctggatgtcgctgtacttga                      >  2:573457‑M2/1‑43 (MQ=255)                                                                                                          cagcagcTGCAAGCGCGCACCGTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTAGTTCAGCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGAGGAAGTGCGCGCTGTGGGTGAGTGGTCCCAg               <  1:497185/150‑1 (MQ=255)                                                                                                                       cgcgcACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGAGGAAGTGCGCGCTGTGGGTGAGTGGTCCCAGGCCAACCCGCAgg  <  1:514256/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                GACATCCAGCCTGTCTACCTGCCGCCGGCCGACGCCCGCGCCGCCTTCGAGCGCGGCAGCGTGGATGCCTGGGTGATCTGGGACCCCTACCAGGCCGCCGCCGAGCAGCAGCTGCAAGCGCGCACCCTGCGTGACGGCAAGGGCCTGGTCGACAACCACCAGTTCTACCTCGCCACCCGCAACTATGCGACACAGCACCCAGCGGTGATCAACACCGTGATCGAGGAAGTGCGCGCTGTGGGTGAGTGGTCCCAGGCCAACCCGCAGG  >  NC_002947/292097‑292364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.