New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2581091 =	26 (1.120)	4 (0.180)	4/238	NT	13.9%	coding (270/867 nt)	PP_2262	sugar ABC transporter permease
	?	NC_002947	2581119 =	25 (1.150)					coding (298/867 nt)	PP_2262	sugar ABC transporter permease

CCGACTGGTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTGGCCAAGCTCGGGGTCAGCTA  >  NC_002947/2580973‑2581249                                                                                                                                                   |                                                                                                                                    ccGACTGGTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCgg                                                                                                                                  <  2:4370/150‑1 (MQ=255)    aCTGGTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGgtgt                                                                                                                               >  2:3771/1‑150 (MQ=255)              ccAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGt                                                                                                                     >  1:478601/1‑150 (MQ=255)                 ggTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCAt                                                                                                                  <  2:478601/150‑1 (MQ=255)                  gTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATg                                                                                                                 <  1:369059/150‑1 (MQ=255)                             cccGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGtt                                                                                                      >  2:265079/1‑150 (MQ=255)                               cGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGAGCTGCGTGCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCTGTTGc                                                                                                    >  1:261716/1‑150 (MQ=255)                                     tGCACGACGCATTGCTGCGCCCGTTCATTTACTCGGCCTGCGTCCTCCTGCTCGAAATTCCATTGGGTATAAGCATCGCTCTGGCCATGCCAACCAAAGGCTGCATAGCCTCGGTGTGCCTGAATGTCATGACTACACCGTTGCTGATcc                                                                                              >  2:77763/1‑150 (MQ=255)                                     tGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGc                                                                                                    >  2:237668/1‑144 (MQ=255)                                     tGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGc                                                                                                    <  1:237668/144‑1 (MQ=255)                                                ttGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTg                                                                                   <  2:79057/150‑1 (MQ=255)                                                       gcCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCa                                                                            <  1:150629/150‑1 (MQ=255)                                                         cAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACt                                                                          >  2:462713/1‑150 (MQ=255)                                                         cAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCCAGGTGAACCGGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACt                                                                          >  2:16539/1‑150 (MQ=255)                                                            ttCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATc                                                                       <  2:388551/150‑1 (MQ=255)                                                             tgccgaccacgttccacgggatcagcaacgggatagccatgacgatcaggcacaccgaGGCCATGCCAACCAAAGGCCGCATGGCCTCGgt                                                                                                                                 >  2:165835‑M1/59‑91 (MQ=255)                                                             tgccgaccacgttccacgggatcagcaacgggatagccatgacgatcaggcacaccgaGGCCATGCCAACCAAAGGCCGCATGGCCTCGgt                                                                                                                                 <  1:165835‑M1/33‑1 (MQ=255)                                                                        ttccacgggatcagcaacgggatagccatgacgatcaggcacaccgaGGCCATGCCAACCAAAGGCCGCATGGCCTCg                                                                                                                                   >  1:351776‑M1/48‑78 (MQ=255)                                                                        ttccacgggatcagcaacgggatagccatgacgatcaggcacaccgaGGCCATGCCAACCAAAGGCCGCATGGCCTCg                                                                                                                                   <  2:351776‑M1/31‑1 (MQ=255)                                                                        gCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTc                                                          <  2:442195/150‑1 (MQ=255)                                                                                          aaaatcacATTGGGTATAGGCCTCGCTGTCGCTATGCCAACCAAAGGCCGCATGGCCGCGGTGTGCCTGATCGTCATGGCTTTCCCGTTGCTGGTCCCATGGAGCCTGGTCCGCATGATC‑TGTCAGATTTTCGTCCGTGCCGGTATCTGc                                        <  2:6494/143‑1 (MQ=255)                                                                                                ccATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTc                                  <  1:462713/150‑1 (MQ=255)                                                                                                           aGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCt                       >  1:83334/1‑150 (MQ=255)                                                                                                             gCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTgg                     >  2:299536/1‑150 (MQ=255)                                                                                                              cATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTGGc                    <  2:83334/150‑1 (MQ=255)                                                                                                               aTCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGTCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTGGcc                   >  2:141727/1‑150 (MQ=255)                                                                                                                  gCTCTGGCCCTACCCACAAAAGGCCGCATTGGCTCGGGGTGCCTGATTGTCATGGCTATCCCGTTGCTGATCCCGTCGAACGTGGTCGGCCCTACCACGCCTGAGCATC‑CCGGTCCCGAGATTGGCCTGCGTGTCGCTTCCCTGGCCAAg                >  2:135371/1‑150 (MQ=255)                                                                                                                  accgaggccatgcggcctttggttggcatggccTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCa                                                                            >  2:165835‑M2/34‑91 (MQ=255)                                                                                                                  accgaggccatgcggcctttggttggcatggccTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCa                                                                            <  1:165835‑M2/58‑1 (MQ=255)                                                                                                                    cgaggccatgcggcctttggttggcatggccTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGaa                                                                                       <  2:351776‑M2/47‑1 (MQ=255)                                                                                                                    cgaggccatgcggcctttggttggcatggccTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGaa                                                                                       >  1:351776‑M2/32‑78 (MQ=255)                                                                                                                        GCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGGACGTGGTCGGCACTATC‑TGCACGATTTTCCGCCGTGCCGATTTCGGCCTGCTCGGCGCTTCCCTGGCCAAGCTCggg          >  1:77763‑M1/1‑150 (MQ=255)                                                                                                                              CCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGATCGTGGTCTGTACTATC‑TGGCAGATTTTCGGGCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTGGCCAAGCTCGGGGTCAGc    >  2:356347‑M1/1‑150 (MQ=255)                                                                                                                                aaccaaAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTGGCCAAGCTCGGGGTCa      >  2:482640/1‑146 (MQ=255)                                                                                                                                aaccaaAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTGGCCAAGCTCGGGGTCa      <  1:482640/146‑1 (MQ=255)                                                                                                                                aaccaaAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTGGCCAAGCTCGGGGTCAGCTa  >  1:213638/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                    CCGACTGGTACCGCCAGGTGCTGCGCGACCCGGCGCTGCACGACGCATTGCTGCGCCAGTTCATTTACTCGGCCTGCGTCCTGCTGATCGAAATTCCATTGGGTATAGGCATCGCTCTGGCCATGCCAACCAAAGGCCGCATGGCCTCGGTGTGCCTGATCGTCATGGCTATCCCGTTGCTGATCCCGTGGAACGTGGTCGGCACTATC‑TGGCAGATTTTCGGCCGTGCCGATATCGGCCTGCTCGGCGCTTCCCTGGCCAAGCTCGGGGTCAGCTA  >  NC_002947/2580973‑2581249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.