New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2942765 =	18 (0.770)	3 (0.130)	3/244	NT	13.5%	intergenic (‑523/‑850)	PP_2575/PP_2577	hypothetical protein/paraquat‑inducible protein B
	?	NC_002947	2942805 =	21 (0.940)					intergenic (‑563/‑810)	PP_2575/PP_2577	hypothetical protein/paraquat‑inducible protein B

TCACGGCAGTATCACCTTCATCGCTCTGGTCATGGCGCTGTCGATCATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGATGTGATCCCCGGTATCGGCCTGCTGGCCCTGGCCGCATTGAGCATGTTGATCAT  >  NC_002947/2942659‑2942943                                                                                                                                                   |                                                                                                                                           tCACGGCAGTATCACCTTCATCGCTCTGGTCATGGCGCTGTCGATCATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGa                                                                                                                                         >  1:304985/1‑150 (MQ=255)      gCAGTATCACCTTCATCGCTCTGGTCATGGCTCTGTCGAGCATTTTTGCGCCGGTACTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCGGGCCAGCCTGCCGCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGcc                                                                                                                                    >  1:495641/1‑150 (MQ=255)            tCACCTTCATCGCTCTGGTCATGGCGCTGTCGATCATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGc                                                                                                                              >  1:185347/1‑150 (MQ=255)              aCCTTCATCGCTCTGGTCATGGCGCTGTCGATCATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGccc                                                                                                                            <  2:502580/150‑1 (MQ=255)               ccTTCATCGCTCTGGTCATGGCGCTGTCGATCATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCt                                                                                                                           <  1:15489/150‑1 (MQ=255)                               cATGGCGCTGTCGATCATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGgt                                                                                                           <  1:394209/150‑1 (MQ=255)                                 tGGCGCTGTCGATCATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGgtgt                                                                                                         <  1:345502/150‑1 (MQ=255)                                 tGGCGCCGTCGATCAGGTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGgtgt                                                                                                         <  2:475351/150‑1 (MQ=255)                                              cATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGc                                                                                            >  2:409203/1‑150 (MQ=255)                                                     gcgcCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGAtggtg                                                                                     <  1:409203/150‑1 (MQ=255)                                                     gcgcCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGAtggtg                                                                                     <  1:584929/150‑1 (MQ=255)                                                        ccgcTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCg                                                                                  <  2:185347/150‑1 (MQ=255)                                                                                   tGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGAt                                                       <  2:304985/150‑1 (MQ=255)                                                                                         ttGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTAGATGTGATc                                                 >  1:257918/1‑150 (MQ=255)                                                                                                     cTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTggg                                                                                               <  1:331929/92‑1 (MQ=255)                                                                                                     cTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTggg                                                                                               >  2:331929/1‑92 (MQ=255)                                                                                                            gccacgcatgcacagggcaaagccgggggcacgctggccTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCgg                                                                                 <  2:600085‑M2/60‑1 (MQ=255)                                                                                                            gccacgcatgcacagggcaaagccgggggcacgctggccTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCgg                                                                                 >  1:600085‑M2/40‑99 (MQ=255)                                                                                                              cacgcatgcacagggcaaagccgggggcacgctggccTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGATGTGATCCCCGGTATCGGCCTGctggcc                            >  2:28122‑M2/38‑150 (MQ=255)                                                                                                               atcGTGCCCCCGGCTTTCCCCTGTCCCTGCTTCGCCTGAACCGCCTGCTGCCATGGCGCATGCTGGAGGTGTGTCTGCTGTGCGCGATGTTGTTGTCGTTCCAGCTGGCGTGGCTGCTCGATGTGATCCCCGGTATCGGCCTGctggccc                           <  2:257918/148‑1 (MQ=255)                                                                                                                                gCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGAt                                                       <  2:147936/105‑1 (MQ=255)                                                                                                                                gCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGAt                                                       >  1:147936/1‑105 (MQ=255)                                                                                                                                  ccTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGATGTGATCCCCGGTATCGGCCTGctggccctgg                        <  1:582850/134‑1 (MQ=255)                                                                                                                                  ccTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGATGTGATCCCCGGTATCGGCCTGctggccctgg                        >  2:582850/1‑134 (MQ=255)                                                                                                                                        cATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGATGTGATCCCCGGTATCGGCCTGCTGGCCCTGGCCGCATTGAGCATGTTGatcat  >  1:78914/1‑150 (MQ=255)                                                                                                                                         aTGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCgg                                                                  >  2:423492/1‑85 (MQ=255)                                                                                                                                         aTGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCgg                                                                  <  1:423492/85‑1 (MQ=255)                                                                                                                                                gccTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGa                                                        <  2:373092‑M2/85‑1 (MQ=255)                                                                                                                                                gccTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGa                                                        >  1:373092‑M2/4‑88 (MQ=255)                                                                                                                                                   |                                                                                                                                           TCACGGCAGTATCACCTTCATCGCTCTGGTCATGGCGCTGTCGATCATTTTTGCGCCGCTGCTGCAAATTGCCCTGTTGTGCTGGGTGTTGGGTTTTGCCCTTGCCGGCCAGCGTGCCCCCGGCTTTGCCCTGTGCATGCGTGGCCTGGAAAGCCTGCGGCCCTGGAGCATGCTGGAGGTGTGTCTGCTGGGGGCGATGGTGGCGGTGATCAAGCTGGCGGGGCTGCTCGATGTGATCCCCGGTATCGGCCTGCTGGCCCTGGCCGCATTGAGCATGTTGATCAT  >  NC_002947/2942659‑2942943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.