New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2464301 = | 14 (0.550) | 4 (0.170) | 4/254 | 2.6 | 25.8% | intergenic (+13/+27) | lolE/PP_2157 | lipoprotein releasing system permease/sensor histidine kinase |
? | NC_002947 | 2464329 = | 10 (0.420) | coding (1352/1353 nt) | PP_2157 | sensor histidine kinase |
GCAGCAGCGAGCATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCCAGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2464458‑2464301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaggatTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAG > NC_002947/2464329‑2464470 GCAGCAGCGAGCATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGGTTAGTGATAGAATTCACGCAAGACCGGTAATCCTGGCGCGCTTTACGC‑C > 2:344296/1‑150 CAGCGAGCATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCCA < 1:552443/150‑1 AGCGAGCATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCCAG > 1:546911/1‑150 ATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGA > 1:253868/1‑126 ATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGA < 2:253868/126‑1 TGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCA > 1:494697/1‑74 TGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCA < 2:494697/74‑1 CCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTACTGCCTTCCCGTCGAG > 1:119181/1‑150 GCAGCAGCGAGCATGCGGGGCTGGGCCTGGCGATTACCCGGTCGATCGTGCAGGCCCATGGCGGATGCATACGGGCGGAGTGCGAGGGTGGGTGGACCCGATTCGTGATCGAGTTCACTCAAGACCGGTAATCCTGGGGCGCTTTACGC‑CCCCAGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2464458‑2464301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaggatTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAG > NC_002947/2464329‑2464470 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |