New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2464301 =	14 (0.550)	4 (0.170)	4/254	2.6	25.8%	intergenic (+13/+27)	lolE/PP_2157	lipoprotein releasing system permease/sensor histidine kinase
	?	NC_002947	2464329 =	10 (0.420)					coding (1352/1353 nt)	PP_2157	sensor histidine kinase

CAGCTTGCCGTCGCAGTTGCAGTGGGGGGATGTGGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGC  >  NC_002947/2464153‑2464439                                                                                                                                                     |                                                                                                                                            cagcTTGCCGTCGCAGTTGCAGTGGGGGGATGTGGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGAt                                                                                                                                            >  1:233603/1‑150 (MQ=255)    cTTGCCGTCGCAGTTGCAGTGGGGGGATGTGGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCt                                                                                                                                         >  2:210866/1‑150 (MQ=255)       gCCGTCGCAGTTGCAGTGGGGGGATGTGGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTggg                                                                                                                                      <  2:361079/150‑1 (MQ=255)       gCCGTCGCAGTTGCAGTGGGGGGATGTGGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTggg                                                                                                                                      <  2:151228/150‑1 (MQ=255)       ctcgacgggaaggcagtagcgagcatgcggggctgggcctggcgattacccggtcgatcgtgcaggcccatggcggatgcatacgggcggagtgcgagggtgggtggacccgattcgtgatcgagttcactcaagaccggtaATCCTggg                                                                                                                                      >  1:119181‑M1/143‑150 (MQ=255)                                 tgGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCgg                                                                                                           >  1:15115/1‑150 (MQ=255)                                       tcatcTGCACCGCCGGCCTGGTGATGAGTGTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAAGTTCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGa                                                                                                     <  2:272130/150‑1 (MQ=255)                                                                                                   tgcgagggtgggtggacccgattcgtgatcgagttcactcaagaccggtaATCCTGGGG‑GCGTAAAGCGCCCCa                                                                                                                     >  1:494697‑M1/51‑74 (MQ=255)                                                                                                   tgcgagggtgggtggacccgattcgtgatcgagttcactcaagaccggtaATCCTGGGG‑GCGTAAAGCGCCCCa                                                                                                                     <  2:494697‑M1/24‑1 (MQ=255)                                                                                                       gCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATggg                                     >  2:546911/1‑150 (MQ=255)                                                                                                                      gATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGAcc                      <  2:15115/150‑1 (MQ=255)                                                                                                                       aTTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCt                                                                                                        >  1:455931/1‑67 (MQ=255)                                                                                                                       aTTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCt                                                                                                        <  2:455931/67‑1 (MQ=255)                                                                                                                       aTTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTc                                                                                             <  1:497287/78‑1 (MQ=255)                                                                                                                       aTTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTc                                                                                             >  2:497287/1‑78 (MQ=255)                                                                                                                              tGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATc              >  2:235371/1‑150 (MQ=255)                                                                                                                                         tcaagaccggtaATCCTGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGAt                           <  2:253868‑M1/114‑1 (MQ=255)                                                                                                                                         tcaagaccggtaATCCTGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGAt                           >  1:253868‑M1/13‑126 (MQ=255)                                                                                                                                          gTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGc  >  1:528482/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                            CAGCTTGCCGTCGCAGTTGCAGTGGGGGGATGTGGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGC  >  NC_002947/2464153‑2464439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.