New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2464301 = | 14 (0.550) | 4 (0.170) | 4/254 | 2.6 | 25.8% | intergenic (+13/+27) | lolE/PP_2157 | lipoprotein releasing system permease/sensor histidine kinase |
? | NC_002947 | 2464329 = | 10 (0.420) | coding (1352/1353 nt) | PP_2157 | sensor histidine kinase |
TGGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAG > NC_002947/2464185‑2464470 | tgGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCgg > 1:15115/1‑150 (MQ=255) tcatcTGCACCGCCGGCCTGGTGATGAGTGTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAAGTTCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGa < 2:272130/150‑1 (MQ=255) atcgtgcaggcccatggcggatgcatacgggcggagtgcgagggtgggtggacccgattcgtgatcgagttcactcaagaccggtaatcctgggggcgtaaagcgccccaggatTACCGGTCTTGa > 1:253868‑M2/115‑126 (MQ=255) atcgtgcaggcccatggcggatgcatacgggcggagtgcgagggtgggtggacccgattcgtgatcgagttcactcaagaccggtaatcctgggggcgtaaagcgccccaggatTACCGGTCTTGa < 2:253868‑M2/12‑1 (MQ=255) gCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATggg > 2:546911/1‑150 (MQ=255) gATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGAcc < 2:15115/150‑1 (MQ=255) aTTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCt > 1:455931/1‑67 (MQ=255) aTTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCt < 2:455931/67‑1 (MQ=255) aTTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTc < 1:497287/78‑1 (MQ=255) aTTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTc > 2:497287/1‑78 (MQ=255) tGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATc > 2:235371/1‑150 (MQ=255) tcaagaccggtaATCCTGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGAt < 2:253868‑M1/114‑1 (MQ=255) tcaagaccggtaATCCTGGGGCGCTTTACGC‑CCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGAt > 1:253868‑M1/13‑126 (MQ=255) gTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGc > 1:528482/1‑150 (MQ=255) CTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCgct > 1:546911‑M1/1‑150 (MQ=255) TGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCgctg < 1:552443‑M1/150‑1 (MQ=255) tggggcgctttacgcccccaggatTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCa > 1:494697‑M2/25‑74 (MQ=255) tggggcgctttacgcccccaggatTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCa < 2:494697‑M2/50‑1 (MQ=255) G‑GCGTAAAGCGCGCCAGGATTACCGGTCTTGCGTGAATTCTATCACTAACCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCtgctgc > 2:344296‑M1/1‑150 (MQ=255) cccaggatTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTACTGCCTTCCCGTCGAg > 1:119181‑M2/9‑150 (MQ=255) | TGGCGATCATCTGCACCGCCGGCCTGGTGATGAGTTTCCTGGCGACCATTTACCCGGCCTACCGGGCGTCGCAGGTGCAGCCGGCGATTGGCCTGGCGGTTTGATGTCTGCCTGAGATCCTGGGG‑GCGTAAAGCGCCCCAGGATTACCGGTCTTGAGTGAACTCGATCACGAATCGGGTCCACCCACCCTCGCACTCCGCCCGTATGCATCCGCCATGGGCCTGCACGATCGACCGGGTAATCGCCAGGCCCAGCCCCGCATGCTCGCTGCTGCCTTCCCGTCGAG > NC_002947/2464185‑2464470 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |