New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3989028 =	19 (0.750)	5 (0.200)	4/262	2.7	21.6%	coding (1502/2085 nt)	oplA	5‑oxoprolinase A
	?	NC_002947	3989083 =	18 (0.740)					coding (1557/2085 nt)	oplA	5‑oxoprolinase A

CTGGTTGAGTTGCGCCAGGTCGACGTGCCCGGCGTCCAGGCGCA‑‑TCGA‑CAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3989080‑3989028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGG  >  NC_002947/3989083‑3989183                                                                                                                                                               CTGGTTGAGTTGCGCCAGGTCGACGTGCCCGGCGTCCAGGCGCA‑‑TCGA‑CAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTAC      >  2:164404/1‑150    GTTGAGTTGCGCCAGGTCGACGTGCCCGGCGTCCAGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTAC      >  1:341539/1‑150    GTTGAGTTGCGCCAGGTCGACGTGCCCGGCGTCCAGGCGCA‑‑TCGA‑CAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGAT             <  1:550099/140‑1    GTTGAGTTGCGCCAGGTCGACGTGCCCGGCGTCCAGGCGCA‑‑TCGA‑CAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGAT             >  2:550099/1‑140     TTGAGTTGCGCCAGGTCGACGTGCCCGGCGTCCAGGCGCA‑‑TCGA‑CAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGG  <  1:164404/150‑1                                                                                                                                                               CTGGTTGAGTTGCGCCAGGTCGACGTGCCCGGCGTCCAGGCGCA‑‑TCGA‑CAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3989080‑3989028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGG  >  NC_002947/3989083‑3989183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.