New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3989028 =	19 (0.750)	5 (0.200)	4/262	2.7	21.6%	coding (1502/2085 nt)	oplA	5‑oxoprolinase A
	?	NC_002947	3989083 =	18 (0.740)					coding (1557/2085 nt)	oplA	5‑oxoprolinase A

TGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGAGTGCAGTGTGGACCTGCAGCAGCACAGCCTGGACGA  >  NC_002947/3988936‑3989232                                                                                                                                                    |                                                                                                                                                      tGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCt                                                                                                                                                     <  1:597386/150‑1 (MQ=255)        cacaCCGTGCTGATCCCCAAGGTGGCCTCGGGCTCGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGaa                                                                                                                                              >  2:175562/1‑150 (MQ=255)                       cccAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTc                                                                                                                                                    <  2:606561/129‑1 (MQ=255)                       cccAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTc                                                                                                                                                    >  1:606561/1‑129 (MQ=255)                       cccAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATACTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCCGGCCCGTCGGCCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGc                                                                                                                               >  2:174243/1‑150 (MQ=255)                        ccAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGcc                                                                                                                              >  1:313796/1‑150 (MQ=255)                                  cTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCt                                                                                                                    >  2:280690/1‑150 (MQ=255)                                         ttGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGaa                                                                                                             >  1:380859/1‑150 (MQ=255)                                              tgCGTTCGGCCAGATCCTGTCCGACGTTCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACgg                                                                                                        >  1:551768/1‑150 (MQ=255)                                                 gTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCtt                                                                                                     >  2:540865/1‑150 (MQ=255)                                                                                   cAGCTCACCAGCCTGTCGCTGCGCCTGGACGCCGGGCACTTCGACCTGGGGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTg                                                                   <  2:380859/150‑1 (MQ=255)                                                                                     gCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGga                                                                 <  1:280690/150‑1 (MQ=255)                                                                                      cTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCCACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGgag                                                                <  2:551768/150‑1 (MQ=255)                                                                                            aGCCTGTCGATGCACCGGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATgcgc                                                          >  2:8432/1‑150 (MQ=255)                                                                                               gttgagttgcgccaggtcgacgtgcccggcgtccaggcgcaactcaaccaggcCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTAc                                                       >  1:341539‑M2/54‑150 (MQ=255)                                                                                               ctggttgagttgcgccaggtcgacgtgcccggcgtccaggcgcatcgacaggcCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTAc                                                       >  2:164404‑M2/54‑150 (MQ=255)                                                                                                  gttgagttgcgccaggtcgacgtgcccggcgtccaggcgcatcgacaggcCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGAt                                                              <  1:550099‑M2/90‑1 (MQ=255)                                                                                                  gttgagttgcgccaggtcgacgtgcccggcgtccaggcgcatcgacaggcCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGAt                                                              >  2:550099‑M2/51‑140 (MQ=255)                                                                                                   ttgagttgcgccaggtcgacgtgcccggcgtccaggcgcatcgacaggcCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTgg                                                   <  1:164404‑M2/101‑1 (MQ=255)                                                                                                                cGCCGTGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGa                                      <  1:8432/150‑1 (MQ=255)                                                                                                                          gTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGAGTGCAGtgtg                            >  2:143200/1‑150 (MQ=255)                                                                                                                                 tGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGAGTGCAGTGTGGACCTgc                     >  2:467208/1‑150 (MQ=255)                                                                                                                                       aaCTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGAGTGCAGTGTGGACCTgcagcagc               >  1:314468/1‑150 (MQ=255)                                                                                                                                                    ccTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGAGTGCAGTGTGGACCTGCAGCAGCACAGCCt        >  2:178417/1‑144 (MQ=255)                                                                                                                                                    ccTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGAGTGCAGTGTGGACCTGCAGCAGCACAGCCt        <  1:178417/144‑1 (MQ=255)                                                                                                                                                    ccTCGACGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGAAGCCTTCGTTCACTAGGCCTGGAGGTGGCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGAGTGCAGTGTGGACCTGCAGCAGCACAGCCTGGACGa  <  1:540865/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TGGCATGCACACCGTGCTGATCCCCAAGGTGGCCTCGGGCTTGTGTGCGTTCGGCCAGATCCTGTCCGACGTGCGCTACGACCAGCTCACCAGCCTGTCGATGCGCCTGGACGCCGGGCACGTCGACCTGGCGCAACTCAACCAGGCCCTCGCCGAACTACGTCAGCAAGGCCTTGCCAACCTGCGCGAAGACGGCTTTGGCGACCAGGCCAGCAGTTGCCACTACACCCTGGAGATGCGCTACCTGGGGCAGATTCATGAGTGCAGTGTGGACCTGCAGCAGCACAGCCTGGACGA  >  NC_002947/3988936‑3989232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.