New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5216577 =	22 (0.870)	8 (0.330)	8/262	1.7	28.0%	coding (177/2331 nt)	PP_4596	putative oxidoreductase
	?	NC_002947	5216608 =	20 (0.820)					coding (146/2331 nt)	PP_4596	putative oxidoreductase

CCCTGGTATTCAAGCCAGTAGTCGGTCTGCTCCTTCAGCGCGCTGACGCTGTATTTGGCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAG  >  NC_002947/5216428‑5216713                                                                                                                                                      |                                                                                                                                         cgcatgagccaggacgaacacatcagggactacaagggcgccgctgccggctggggggcgctcaaaagcgtgaccaagagctggctgggcagcgacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttc                                                                                                                                          >  1:523314‑M1/150‑150 (MQ=255)                              cTCCTTCAGCGCGCTGTCGCTGTATTTGGCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTc                                                                                                             <  1:539975/150‑1 (MQ=255)                               tacaagggcgccgctgccggctggggggcgctcaaaagcgtgaccaagagctggctgggcagcgacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACT‑GCCCCAGGCACAGCCGGGGCAGTc                                                                                                             >  2:492052‑M1/120‑148 (MQ=255)                               tacaagggcgccgctgccggctggggggcgctcaaaagcgtgaccaagagctggctgggcagcgacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACT‑GCCCCAGGCACAGCCGGGGCAGTc                                                                                                             <  1:492052‑M1/29‑1 (MQ=255)                                          gcTGACGCCGGATTTGGCGAAGAAAGCCGGGTAGACCTCGCGGCCGGTGGCTTCGCAGTTGACCGCCTTGGCTCCGTTGTCGCAGAACTTGACCATGTCGCTTTCCGACGACTCGGCCCACGCACAGCCGGGGCAGTCGAAGcagccgat                                                                                                 >  2:485553/1‑148 (MQ=255)                                                          gCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGTCCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAAc                                                                                                        >  1:295219/1‑127 (MQ=255)                                                          gCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAAc                                                                                                        <  2:295219/127‑1 (MQ=255)                                                           cGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGc                                                                                                                                   >  2:573526/1‑99 (MQ=255)                                                           cGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGc                                                                                                                                   <  1:573526/99‑1 (MQ=255)                                                                aaaGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGcc                                                                           >  1:283190/1‑150 (MQ=255)                                                                        gTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGtt                                                                   >  2:541343/1‑150 (MQ=255)                                                                          ccaagagctggctgggcagcgacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACTCGCCCCAGGCACAGCCGGGGCAGt                                                                                                              <  1:315219‑M1/29‑1 (MQ=255)                                                                          ccaagagctggctgggcagcgacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACTCGCCCCAGGCACAGCCGGGGCAGt                                                                                                              >  2:315219‑M1/77‑105 (MQ=255)                                                                              ctaGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGaa                                                             <  1:72705/148‑1 (MQ=255)                                                                                    gCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGtt                                                       <  2:283190/150‑1 (MQ=255)                                                                                      tgggcagcgacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACT‑GCCCCAGGCACAGcc                                                                                                                      >  2:216776‑M1/65‑84 (MQ=255)                                                                                      tgggcagcgacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACT‑GCCCCAGGCACAGcc                                                                                                                      <  1:216776‑M1/20‑1 (MQ=255)                                                                                        gTGGCTTCCGAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCg                                                   >  2:60109/1‑150 (MQ=255)                                                                                             ttCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCa                                                                                                                               >  2:355512/1‑69 (MQ=255)                                                                                             ttCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCa                                                                                                                               <  1:355512/69‑1 (MQ=255)                                                                                              gacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTc                                                                                                >  2:280248‑M1/57‑99 (MQ=255)                                                                                              gacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTc                                                                                                <  1:280248‑M1/43‑1 (MQ=255)                                                                                                       aCCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCtgg                                                                                             >  1:573625/1‑93 (MQ=255)                                                                                                       aCCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCtgg                                                                                             <  2:573625/93‑1 (MQ=255)                                                                                                          gCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTg                                 <  1:541343/150‑1 (MQ=255)                                                                                                           ccTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTgg                                <  1:611408/150‑1 (MQ=255)                                                                                                                  gcCGTTTTCGCAGAACTTGACCATGACGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCt                         >  2:570622/1‑150 (MQ=255)                                                                                                                      ttttCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAg                                                            <  2:140169/111‑1 (MQ=255)                                                                                                                      ttttCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAg                                                            >  1:140169/1‑111 (MQ=255)                                                                                                                                     aCCATGTCGCTTTCCGGCGTCTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCg      <  1:485553/150‑1 (MQ=255)                                                                                                                                         tGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAg  <  1:570622/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                         CCCTGGTATTCAAGCCAGTAGTCGGTCTGCTCCTTCAGCGCGCTGACGCTGTATTTGGCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAG  >  NC_002947/5216428‑5216713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.