New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5216577 =	22 (0.870)	8 (0.330)	8/262	1.7	28.0%	coding (177/2331 nt)	PP_4596	putative oxidoreductase
	?	NC_002947	5216608 =	20 (0.820)					coding (146/2331 nt)	PP_4596	putative oxidoreductase

GCTGACGCTGTATTTGGCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTAGTCCCTGATGTGTTCGTCCTGGCTCATGCGA  >  NC_002947/5216469‑5216757                                                                                                                                            |                                                                                                                                                      gcTGACGCCGGATTTGGCGAAGAAAGCCGGGTAGACCTCGCGGCCGGTGGCTTCGCAGTTGACCGCCTTGGCTCCGTTGTCGCAGAACTTGACCATGTCGCTTTCCGACGACTCGGCCCACGCACAGCCGGGGCAGTCGAAGcagccgat                                                                                                                                             >  2:485553/1‑148 (MQ=255)                 gCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGTCCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAAc                                                                                                                                                    >  1:295219/1‑127 (MQ=255)                 gCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAAc                                                                                                                                                    <  2:295219/127‑1 (MQ=255)                       aaaGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGcc                                                                                                                       >  1:283190/1‑150 (MQ=255)                               gTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGtt                                                                                                               >  2:541343/1‑150 (MQ=255)                                     ctaGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGaa                                                                                                         <  1:72705/148‑1 (MQ=255)                                           gCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGtt                                                                                                   <  2:283190/150‑1 (MQ=255)                                               gTGGCTTCCGAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCg                                                                                               >  2:60109/1‑150 (MQ=255)                                                     gacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTc                                                                                                                                            <  1:280248‑M1/43‑1 (MQ=255)                                                     gacaacgccttcaagaacctgcgggccatgctcaagaccaaccagaacggcggtttCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTc                                                                                                                                            >  2:280248‑M1/57‑99 (MQ=255)                                                              aCCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCtgg                                                                                                                                         <  2:573625/93‑1 (MQ=255)                                                              aCCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCtgg                                                                                                                                         >  1:573625/1‑93 (MQ=255)                                                                 gCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTg                                                                             <  1:541343/150‑1 (MQ=255)                                                                  ccTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTgg                                                                            <  1:611408/150‑1 (MQ=255)                                                                         gcCGTTTTCGCAGAACTTGACCATGACGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCt                                                                     >  2:570622/1‑150 (MQ=255)                                                                             ttttCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAg                                                                                                        >  1:140169/1‑111 (MQ=255)                                                                             ttttCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAg                                                                                                        <  2:140169/111‑1 (MQ=255)                                                                                            aCCATGTCGCTTTCCGGCGTCTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCg                                                  <  1:485553/150‑1 (MQ=255)                                                                                                tGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAg                                              <  1:570622/150‑1 (MQ=255)                                                                                                 gaacggcggtttcgactgccccggctgtgcctggggcgagtcgAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTc                                                                                                <  1:280248‑M2/56‑1 (MQ=255)                                                                                                 gaacggcggtttcgactgccccggctgtgcctggggcgagtcgAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTc                                                                                                >  2:280248‑M2/44‑99 (MQ=255)                                                                                                               gactgccccggctgtgcctggggcagtcgAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTa                                 <  1:492052‑M2/119‑1 (MQ=255)                                                                                                               gactgccccggctgtgcctggggcagtcgAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTa                                 >  2:492052‑M2/30‑148 (MQ=255)                                                                                                               actgccccggctgtgcctggggcgagtcgAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTgg                                                                            >  2:315219‑M2/30‑105 (MQ=255)                                                                                                               actgccccggctgtgcctggggcgagtcgAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTgg                                                                            <  1:315219‑M2/76‑1 (MQ=255)                                                                                                                 TCGCCCCAGGCACAGTCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTc                                                                                                              <  2:154923‑M1/69‑1 (MQ=255)                                                                                                                 TCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTc                                                                                                              >  1:154923‑M1/1‑69 (MQ=255)                                                                                                                 TCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTAGTcc                             <  1:47040‑M1/150‑1 (MQ=255)                                                                                                                        ggctgtgcctggggcagtcgAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCcca                                                                                        >  2:216776‑M2/21‑84 (MQ=255)                                                                                                                        ggctgtgcctggggcagtcgAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCcca                                                                                        <  1:216776‑M2/64‑1 (MQ=255)                                                                                                                         ggCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTAGTCCCTGAtgtg                     <  1:60109/150‑1 (MQ=255)                                                                                                                           cacaGTCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCTCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTAGTCCCTGATGTGtt                   <  1:447184/150‑1 (MQ=255)                                                                                                                            accgCCGAGGCAGTCGAAACCGCCGTGATGGCTGATCTTAAGCATGGCACGCAGCTTCGTGAACGCGTTGTCGCGGCCCAGCCACCTCTTGTTCACGCTTTTGAGGGCCCCCCAGCCGGCAGCGGGGCCCTTGTAGTCCCTGATTTGttt                  >  2:415243/4‑149 (MQ=255)                                                                                                                                           gAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTAGTCCCTGATGTGTTCGTCCTGGCTCATGCg   >  1:523314‑M2/2‑150 (MQ=255)                                                                                                                                            aaaCCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTAGTCCCTGATGTGTTCGTCCTGGCTCATGCGa  <  2:47040/150‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                      GCTGACGCTGTATTTGGCGAAGAAAGCCGGGTCGACCGAGCGGCCGGTGGCTTCCCAGTTGACCGCCTTGGCGCCGTTTTCGCAGAACTTGACCATGTCGCTTTCCGGCGACTCGCCCCAGGCACAGCCGGGGCAGTCGAAACCGCCGTTCTGGTTGGTCTTGAGCATGGCCCGCAGGTTCTTGAAGGCGTTGTCGCTGCCCAGCCAGCTCTTGGTCACGCTTTTGAGCGCCCCCCAGCCGGCAGCGGCGCCCTTGTAGTCCCTGATGTGTTCGTCCTGGCTCATGCGA  >  NC_002947/5216469‑5216757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.