New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1789697	108 (1.160)	9 (0.100)	8/236	NT	8.0%	coding (373/816 nt)	cdsA	CTP:phosphatidate cytidyltransferase
	?	NC_002947	= 1789716	104 (1.180)					coding (392/816 nt)	cdsA	CTP:phosphatidate cytidyltransferase

CGGAACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1789542‑1789697 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagggcCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGGTAGGTA‑AGCACCAGCCAGGTGGCCAGCCCCCACCAGATCACGGCAGC  <  NC_002947/1789716‑1789568                                                                                                                                                                                                                                                                                                                    CGGAACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGC                                                                                                                                                              >  1:673986/1‑150  GGAACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATGTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCA                                                                                                                                                             >  2:1072278/1‑150   GAACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAA                                                                                                                                                            <  2:595789/150‑1    AACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAG                                                                                                                                                           <  2:223356/150‑1    AACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAG                                                                                                                                                           <  2:1344642/150‑1    AACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCACCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAG                                                                                                                                                           <  2:1374191/150‑1     cCTGCCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGG                                                                                                                                                          <  1:925490/149‑1     ACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGG                                                                                                                                                          <  2:1585121/150‑1                  GTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGAG                                                                                                                                             >  2:1889122/1‑150                                CGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGAGCAGCACCAGCCCTT                                                                                                                               <  1:659549/150‑1                                     TCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAG                                                                                                                          <  1:1889122/150‑1                                                             TGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGTGCAGCACCAGCCCTTGCCA                                                                                                                           >  1:2238881/1‑125                                                             TGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCA                                                                                                                           <  2:2238881/125‑1                                                                     ACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGAGCAGCACCAGCC                                                                                                                                  >  2:454904/1‑110                                                                     ACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGAGCAGCACCAGCC                                                                                                                                  <  1:454904/110‑1                                                                                                  CAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAG                                                                                                                          <  1:1162826/89‑1                                                                                                  CAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAG                                                                                                                          >  2:1162826/1‑89                                                                                                                                                      gaatGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGGTAGGTA‑AGCACCAGCCAGGGGGCCAGCCCCCACCAGATCAC        >  1:1264923/5‑150                                                                                                                                                      CAAGGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGGTAGGTA‑AGCACCAGCCAGGTGGCCAGCCCCCACCAGATCAC        >  1:1504147/1‑150                                                                                                                                                       AAGGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGGTAGGTA‑AGCACCAGCCAGGTGGCCAGCCCCCACCAGATCACG       >  1:372165/1‑150                                                                                                                                                       AAGGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGGTAGGTA‑AGCACCAGCCAGGTGGCCAGCCCCCACCAGATCACG       >  2:2422912/1‑150                                                                                                                                                       AAGGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGG‑AGACATAGCACCAGCCAGGTGGCCAGCCCCCACCAGATCACG       >  1:23709/1‑150                                                                                                                                                         GGGCCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGGTAGGTA‑AGCACCAGCCAGGTGGCCAGCCCCCACCAGATCACGGC     <  1:1531498/150‑1                                                                                                                                                           GCCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGGTAGGTA‑AGCACCAGCCAGGTGGCCAGCCCCCACCAGATCACGGCAG   >  2:1966447/1‑150                                                                                                                                                            CCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGGTGCGCGGGTAGGTA‑AGCACCAGCCAGGTGGCCAGCCCCCACCAGATCACGGCAGC  <  2:1285327/150‑1                                                                                                                                                                                                                                                                                                                    CGGAACTGGCGCCCTGGGTGCTGGGCGCTGCCGTGATCTGGTGGGGGCTGGCCACCTGGCTGGTGCTTACCTACCCGCGCAGCAGCGACCTGTGGGCCAGTGCGGCCTGTCGGTTGTTGATCGGCCTGCTGGTGTTGCTGCCGGCCTGGCAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1789542‑1789697 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagggcCAGTGCTTGAGCAGCACCAGCCCTTGCCAGGCCGGCAGCAACACCAGCAGGCCGATCAACAACCGACAGGCCGCACTGGCCCACAGGTCGCTGCTGCGCGGGTAGGTA‑AGCACCAGCCAGGTGGCCAGCCCCCACCAGATCACGGCAGC  <  NC_002947/1789716‑1789568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.