| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5533648 = | 94 (1.010) | 5 (0.050) | 5/244 | NT | 5.2% | coding (875/1137 nt) | PP_4867 | BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5533682 = | 92 (1.010) | coding (841/1137 nt) | PP_4867 | BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein | |||||
GAGCAAGGCCTGAAGGACGTCAAGTTCATGTCCGATGATGGCATCGTCACCGACGAACTGGTGTCTACCGCCGGCGGCGCGCAATACGTTGACGGCGTGTACATGACCTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5533799‑5533648‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtCGGCACCGAAGGTCATGTACACGCCGTCAACGTATTGCGCGCCGCCGGCGGTAGACACCAGTTCGTCGGTGACGATGCCATCATCGGACATGAACTTGACGTCCTTCAGGCCTTGCTCGCGCAGCTGGCGTACCAGCGGGCC > NC_002947/5533682‑5533823 GAGCAAGGCCTGAAGGACGTCAATTTCATGTCCGATGATGGCATCGTCACCGACGAACTGGTGTCTACCGCCGGCGGCGCGCAATACGTTGACGGCGTGTACATGACCTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTG < 2:2325920/150‑1GAGCAAGGCCTGAAGGACGTCAAGTTCATGTCCGATGATGGCATCGTCACCGACGAACTGGTGTCTACCGCCGGCGGCGCGCAATACGTTGACGGCGTGTACATGACCTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTG < 1:328354/150‑1GAGCAAGGCCTGAAGGACGTCAAGTTCATGTCCGATGATGGCATCGGCACCGACGAACTGGTGTCTACCGCCGGCGGCGCGCAATACGTTGACGACGTGTACATGACCTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTG < 2:584841/150‑1 CCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTCGGCACCGAAGGTCATGCACACGCCGTCAACGTATTGCGCGCCGCCGGCGGTAGACACCAATTCGTCGGTGACGATGCCATCATCGGACATGAACTTGACGTCCTTCAGGCCT > 2:2340840/1‑150 CGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTCGGCACCGAAGGTCATGTACACGCCGTCAACGTATTGCGCGCCGCCGGCGGTAGACACCAGTTCGTCGGTGACGATGCCATCAT < 1:1951563/120‑1 CGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGTCGGCACCGAAGGTCATGTACACGCCGTCAACGTATTGCGCGCCGCCGGCGGTAGACACCAGTTCGTCGGTGACGATGCCATCAT > 2:1951563/1‑120 CCGCGCCTGCTGCCAGACAGCAAGGCGCGGGTCGGCACCGAAGGTCATGTACACGCCGTCAACGTATTGCGCGCCGCCGGCGGTAGACACCAGTTCGTCGGTGACGATGCCATCATCGGACATGAACTTGACGTCCTTCAGGCCTTGCTC > 2:1643529/1‑150 CTGCTGCCAGACAGCAAGGCGCGGGTCGGCACCGAAGGTCATGTACACGCCGTCAACGTATTGCGCGCCGCCGGCGGTAGACACCAGTTCGTCGGTGACGATGCCATCATCGGACATGAACTTGACGTCCTTCAGGCCTTGCTCGCGCAG > 2:1030479/1‑150 GCGGTGGTCGGCACCGAAGGTCATGCACACGCCGTCAACGTATTGCGCGCCGCCGGCGGTAGACACCAATTCGTCGGTGACGATGCCATCATCGGACATGAACTTGACGTCCTTCAGGCCTTGCTCGCGCAGCTGGCGTACCAGCGGGCC < 1:2340840/150‑1 GAGCAAGGCCTGAAGGACGTCAAGTTCATGTCCGATGATGGCATCGTCACCGACGAACTGGTGTCTACCGCCGGCGGCGCGCAATACGTTGACGGCGTGTACATGACCTTCGGTGCCGACCCGCGCCTGCTGCCAGACAGCAAGGCGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5533799‑5533648‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtCGGCACCGAAGGTCATGTACACGCCGTCAACGTATTGCGCGCCGCCGGCGGTAGACACCAGTTCGTCGGTGACGATGCCATCATCGGACATGAACTTGACGTCCTTCAGGCCTTGCTCGCGCAGCTGGCGTACCAGCGGGCC > NC_002947/5533682‑5533823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |