| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5981467 | 77 (0.830) | 14 (0.170) | 11/226 | NT | 15.9% | coding (2056/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase |
| ? | NC_002947 | = 5981478 | 79 (0.940) | coding (2067/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase | |||||
CCAACCGCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5981307‑5981467‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccctggccaAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAATCAAGGCT < NC_002947/5981478‑5981331 CCAACCGCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTAT < 1:1823483/150‑1CCAACCGCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTAT > 2:839412/1‑150 CAACCGCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGCGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATC > 1:2430088/1‑150 CAACCGCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATC > 2:486572/1‑150 CCGCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCC > 2:231234/1‑150 GCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCT > 1:578904/1‑150 GCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCT < 1:839412/150‑1 CCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTG > 2:2311534/1‑150 CCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCACCTCGCTGCATGCACGTATCGCCCTG < 1:665553/150‑1 CAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGG < 2:696169/150‑1 AGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGC > 2:77621/1‑150 GCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCA > 1:668950/1‑150 TTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGC > 2:112126/1‑150 AAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCA < 1:182547/150‑1 TTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCA > 1:2117660/1‑150 TGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAG < 2:578904/150‑1 TGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAG < 2:2117660/150‑1 GATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAGG < 2:970892/150‑1 ATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAGGG < 1:1625957/150‑1 GCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGC < 1:54494/118‑1 GCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGC > 2:54494/1‑118 TTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCA < 2:2114871/135‑1 TTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCA > 1:2114871/1‑135 TGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAG < 2:1952819/132‑1 TGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAG > 1:1952819/1‑132 CCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAG > 1:2350764/1‑56 CCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAG < 2:2350764/56‑1 GCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGC > 1:112126/1‑150 TATCGCCCTGGCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCG > 2:2410235/1‑150 GCCCTGGCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAA > 2:2029803/1‑150 CCCTGGCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCACGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAAT > 2:915229/1‑150 CTGGCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCATGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCA > 2:984330/1‑132 CTGGCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCATGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCA < 1:984330/132‑1 GGCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAATCAAG < 2:2013960/150‑1 GGCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAATCAAG < 1:314699/150‑1 GGCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAATCAAG < 1:1447165/150‑1 GCCAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAATCAAGG < 1:2287517/150‑1 CAAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAATCAAGGCT > 1:2234341/1‑150 CCAACCGCCAGGCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCACCAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5981307‑5981467‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccctggccaAGC‑CTGGCGCATGGCCAGGGCGATACGTGCATGCAGCGAGGCGCGCTGGTGCACGGGCGTGAGTGCATAAGCGGCCTCCATCACCCGGTCATGAGTGAAGCCCAAGCCGTTCTGGCCCGGTTGCAGGAAGCCAGCGCCAATCAAGGCT < NC_002947/5981478‑5981331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |