New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 598146777 (0.830)14 (0.170) 11/226 NT 15.9% coding (2056/5049 nt) PP_5242 GAF domain‑containing sensor histidine kinase
?NC_002947 = 5981478 79 (0.940)coding (2067/5049 nt) PP_5242 GAF domain‑containing sensor histidine kinase

Only 100 of 144 total aligned reads displayed.

GCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCG  >  NC_002947/5981318‑5981616
                                                                                                                                                      |                                                                                                                                                      
gCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCA                                                                                                                                                        >  1:668950‑M1/1‑150 (MQ=255)
 cGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAt                                                                                                                                                       <  1:2311534/150‑1 (MQ=255)
 cGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAt                                                                                                                                                       <  2:468072/150‑1 (MQ=255)
  gAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATg                                                                                                                                                      <  1:1597787/150‑1 (MQ=255)
    cgctgcaaacccgcaggggctggcgcgttgtagctggctggcgagctcgaacaacacctcgtgcgttcgccctggccaagcctggcgcatggccagggcgatacgtgcaccagcgcgcctcgctgcatgcacgTATCGCCCTGGCCATgc                                                                                                                                                     <  1:686993‑M2/17‑1 (MQ=255)
    aCCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATgcg                                                                                                                                                    >  1:1584690/1‑150 (MQ=255)
     cccTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATgcgc                                                                                                                                                   <  1:693585/150‑1 (MQ=255)
      ccTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTGACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGcc                                                                                                                                                  >  2:1018846/1‑150 (MQ=255)
      ccTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGcc                                                                                                                                                  >  2:1044571/1‑150 (MQ=255)
        ttGAAAGCCTTGATTGGCGCTGGCTTCCTGCACCAGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCGGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAg                                                                                                                                                >  1:2018352/1‑150 (MQ=255)
        ttGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggc                                                                                                                                                >  2:112126‑M1/1‑142 (MQ=255)
           aaaGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgca                                                                                                                                             <  1:182547‑M1/150‑12 (MQ=255)
             aGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtg                                                                                                                                          >  1:2234341‑M2/1‑148 (MQ=255)
               ccTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtggc                                                                                                                                        <  1:2287517‑M2/150‑5 (MQ=255)
                cTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtggcc                                                                                                                                       <  1:314699‑M2/150‑6 (MQ=255)
                cTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtggcc                                                                                                                                       <  2:2013960‑M2/150‑6 (MQ=255)
                 ttGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgcatggcca                                                                                                                                       >  1:2117660‑M1/1‑133 (MQ=255)
                  tGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgcatggccag                                                                                                                                      <  2:2117660‑M1/150‑19 (MQ=255)
                  tGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgcatggccag                                                                                                                                      <  2:578904‑M1/150‑19 (MQ=255)
                   gATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgcatggccagg                                                                                                                                     <  2:970892‑M1/150‑20 (MQ=255)
                    aTTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCGTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtggccaggg                                                                                                                                   >  2:915229‑M2/1‑141 (MQ=255)
                     ttGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtggccagggc                                                                                                                                  >  2:2029803‑M2/1‑140 (MQ=255)
                        gcgcTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGaa                                                                                                                               <  2:1857059/150‑1 (MQ=255)
                         cgcTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtggccagggcgata                                                                                                                              >  2:2410235‑M2/1‑136 (MQ=255)
                              gCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAAGC‑CTGGCGCAtggccagggcgatacgtgc                                                                                                                         >  1:112126‑M2/1‑131 (MQ=255)
                                ttCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgcatggcca                                                                                                                                       <  2:2114871‑M1/135‑18 (MQ=255)
                                ttCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAg                                                                                                                       >  1:225166/1‑150 (MQ=255)
                                    tGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgcatggccag                                                                                                                                      >  1:1952819‑M1/1‑114 (MQ=255)
                                    tGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGgtgt                                                                                                                   <  1:1391526/150‑1 (MQ=255)
                                    tGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGgtgt                                                                                                                   >  1:1333402/1‑150 (MQ=255)
                                    tGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGgtgt                                                                                                                   >  1:613801/1‑150 (MQ=255)
                                    tGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCATGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtggccag                                                                                                                                     <  1:984330‑M2/132‑8 (MQ=255)
                                    tGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCATGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTtggccag                                                                                                                                     >  2:984330‑M2/1‑125 (MQ=255)
                                           gggCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGa                                                                                                            <  2:1149499/150‑1 (MQ=255)
                                           gggCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGa                                                                                                            <  1:486572/150‑1 (MQ=255)
                                            ggCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAg                                                                                                           <  2:613801/150‑1 (MQ=255)
                                                aGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCg                                                                                                       <  2:2053024/150‑1 (MQ=255)
                                                 gAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCgc                                                                                                      >  2:1355188/1‑150 (MQ=255)
                                                 gAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCgc                                                                                                      <  2:643204/150‑1 (MQ=255)
                                                              ttCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACaa                                                                                         >  1:899890/1‑150 (MQ=255)
                                                              ttCACTCATGACCGGGTGATGAAGGCCGCCTATGCACTCACGACCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACaa                                                                                         >  2:628325/1‑150 (MQ=255)
                                                               tCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAAc                                                                                        >  2:559529/1‑150 (MQ=255)
                                                                 aCTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAAcgc                                                                                      <  1:1044571/150‑1 (MQ=255)
                                                                   tCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGtgtt                                                                                                                  >  1:2169287/1‑120 (MQ=255)
                                                                   tCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACgcgc                                                                                    >  1:68575/1‑150 (MQ=255)
                                                                   tCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACgcgc                                                                                    >  1:456175/1‑150 (MQ=255)
                                                                     aTGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCa                                                                                  <  1:341999/150‑1 (MQ=255)
                                                                      tGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCgccagcca                                                                                                >  2:2022736/1‑135 (MQ=255)
                                                                         ccGGGTGATGGAAGCCGCTTTCGCGTTCACGCCCGTTCAC‑CAGCGCGCCTCGCTGCATGCACGTAACGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGccc                                                                              <  1:1108537/150‑1 (MQ=255)
                                                                          cGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGcccc                                                                             >  2:736426/1‑150 (MQ=255)
                                                                           gggTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAAc                                                                                                                              >  1:2197406/1‑100 (MQ=255)
                                                                           gggTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAAc                                                                                                                              <  2:2197406/100‑1 (MQ=255)
                                                                             gTGATGGGGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGc                                                                          <  2:2430088/150‑1 (MQ=255)
                                                                             gTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGc                                                                          >  1:372083/1‑150 (MQ=255)
                                                                               gATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCgg                                                                        <  2:2287517/150‑1 (MQ=255)
                                                                               gATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCgg                                                                        <  1:231234/150‑1 (MQ=255)
                                                                                   gAGGCCGCTTATGCACTCACGCCCGTGCAC‑CCGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGttt                                                                    <  1:1540998/150‑1 (MQ=255)
                                                                                     ggCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGc                                                                  <  1:249093/150‑1 (MQ=255)
                                                                                           ttATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGa                                                            <  2:1447165/150‑1 (MQ=255)
                                                                                               ccagggcgataCGTGCATGCAGCGAGGCGCGCTGG‑TGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCgg                                                                        <  1:2288627‑M1/123‑1 (MQ=255)
                                                                                                 aCTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCACAGATGGGAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTg                                                      >  1:2092010/1‑150 (MQ=255)
                                                                                                   ttaCGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCg                                                    >  2:1808265/3‑150 (MQ=255)
                                                                                                   tCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCg                                                    >  1:1927621/1‑150 (MQ=255)
                                                                                                   tCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCg                                                    >  1:571245/1‑150 (MQ=255)
                                                                                                       gCCCGTGCAC‑CAGCGTGCCTCGCTGCATGCACGTATCGCCCTGTCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGc                                                <  2:15219/150‑1 (MQ=255)
                                                                                                        cccGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCg                                               <  1:1018846/150‑1 (MQ=255)
                                                                                                         ccGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGa                                                                                                                        >  1:2005065/1‑76 (MQ=255)
                                                                                                         ccGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGa                                                                                                                        <  2:2005065/76‑1 (MQ=255)
                                                                                                           GTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTc                                            >  2:1927621‑M1/1‑150 (MQ=255)
                                                                                                              gcatgcagcgaggcgcgctggtgcacgTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGc                                                <  1:1147785‑M2/117‑1 (MQ=255)
                                                                                                                c‑cAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgcatggccag                                                                                                                                      <  2:2350764‑M1/56‑19 (MQ=255)
                                                                                                                c‑cAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCAagcctggcgcatggccag                                                                                                                                      >  1:2350764‑M1/1‑38 (MQ=255)
                                                                                                                  cAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGACCGCACGAGGCGTTGTTCGAGCGCGCCAGCCAGCTAGAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGGAGCGTTCCTGccg                                      >  2:1301639/1‑148 (MQ=255)
                                                                                                                  cAGCGAGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGAGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCACCTGCGGGTTTGCAGCGGATGACTGCGAAGAGTTCCTGCAg                                      <  2:225166/150‑1 (MQ=255)
                                                                                                                   aGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGc                                     <  2:668950/150‑1 (MQ=255)
                                                                                                                   aGCGCGCCTCGCTGCATGCACGTATCGCACTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGc                                     <  2:2018352/150‑1 (MQ=255)
                                                                                                                         ccTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTAc                               <  2:456175/150‑1 (MQ=255)
                                                                                                                           tCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTAcgc                             <  2:880383/150‑1 (MQ=255)
                                                                                                                           tCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTAcgc                             >  1:1719950/1‑150 (MQ=255)
                                                                                                                             gCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGa                           >  2:400634/1‑150 (MQ=255)
                                                                                                                             gCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAAGGGCTGTTCGAGCTTGGCGGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGa                           >  1:1485870/1‑150 (MQ=255)
                                                                                                                                   tgcacgTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGc                     >  1:2223546‑M2/7‑150 (MQ=255)
                                                                                                                                    gcacgTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGa                                                            <  1:143699‑M2/105‑1 (MQ=255)
                                                                                                                                    gcacgTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGa                                                            >  2:143699‑M2/6‑110 (MQ=255)
                                                                                                                                              cccTGGCCAagcctggcgcatggccagggcgatacgtgcatgcagcgaggcgcgctggtgcacgggcgtgagtgcataagcggcctccatcacccggtcatgagtgaagcccacgccgttctggcccggttgcaggaagccagcgccaat           >  2:915229‑M1/1‑9 (MQ=255)
                                                                                                                                              cccTGGCCATGCGCCAG‑GCTtggccagggcgatacgtgcatgcagcgaggcgcgctggtgcacgggcgtgagtgcataagcggcctccatcacccggtcatgagtgaagcccaagccgttctggcccggttgcaggaagccagcgccaat          <  1:1625957‑M2/150‑131 (MQ=255)
                                                                                                                                              cccTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCTCTGCGGGTTTACAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCac          >  2:1147227/1‑150 (MQ=255)
                                                                                                                                              cccTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGa                                                            >  2:2101493/1‑100 (MQ=255)
                                                                                                                                              cccTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGa                                                            <  1:2101493/100‑1 (MQ=255)
                                                                                                                                               ccTGGCCATGCGCCAG‑GCTtggccagggcgatacgtgcatgcagcgaggcgcgctggtgcacgggcgtgagtgcataagcggcctccatcacccggtcatgagtgaagcccaagccgttctggcccggttgcaggaagccagcgccaatc         <  2:970892‑M2/150‑132 (MQ=255)
                                                                                                                                               ccTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCacg         >  1:800547/1‑150 (MQ=255)
                                                                                                                                                cTGGCCAagcctggcgcatggccagggcgatacgtgcatgcagcgaggcgcgctggtgcatgggcgtgagtgcataagcggcctccatcacccggtcatgagtgaagcccaagccgttctggcccggttgca                           >  2:984330‑M1/1‑7 (MQ=255)
                                                                                                                                                cTGGCCATGCGCCAG‑GCTtggccagggcgatacgtgcatgcagcgaggcgcgctggtgcacgggcgtgagtgcataagcggcctccatcacccggtcatgagtgaagcccaagccgttctggcccggttgcaggaagccagcgccaatca        <  2:2117660‑M2/150‑133 (MQ=255)
                                                                                                                                                cTGGCCATGCGCCAG‑GCTtggccagggcgatacgtgcatgcagcgaggcgcgctggtgcacgggcgtgagtgcataagcggcctccatcacccggtcatgagtgaagcccaagccgttctggcccggttgca                          <  2:1952819‑M2/132‑115 (MQ=255)
                                                                                                                                                cTGGCCATGCGCCAG‑GCTtggccagggcgatacgtgcatgcagcgaggcgcgctgg                                                                                                      <  2:2350764‑M2/56‑39 (MQ=255)
                                                                                                                                                 tGGCCATGCGCCAG‑GCTtggccagggcgatacgtgcatgcagcgaggcgcgctggtgcacgggcgtgagtgcataagcggcctccatcacccggtcatgagtgaagcccaagccgttctggcccggttgcaggaa                      >  1:2114871‑M2/1‑17 (MQ=255)
                                                                                                                                                 tGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCacgcg       >  1:2356746/1‑150 (MQ=255)
                                                                                                                                                  ggCCAagcctggcgcatggccagggcgatacgtgcatgcagcgaggcgcgctggtgcacgggcgtgagtgcataagcggcctccatcacccggtcatgagtgaagcccaagccgttctggcccggttgcaggaagccagcgccaatcaag       <  1:1447165‑M1/150‑146 (MQ=255)
                                                                                                                                                   gCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCacgcgac     <  1:1320540/150‑1 (MQ=255)
                                                                                                                                                   gCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGATCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCacgcgac     >  2:783433/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
GCGAACCCTTGAAAGCCTTGATTGGCGCTGGCTTCCTGCAACCGGGCCAGAACGGCTTGGGCTTCACTCATGACCGGGTGATGGAGGCCGCTTATGCACTCACGCCCGTGCAC‑CAGCGCGCCTCGCTGCATGCACGTATCGCCCTGGCCATGCGCCAG‑GCTTGGCCAGGGCGAACGCACGAGGTGTTGTTCGAGCTCGCCAGCCAGCTACAACGCGCCAGCCCCTGCGGGTTTGCAGCGGATGACTGCGAAGCGTTCCTGCAGCTTTTACGCGAAGCCGCATCATGCGCACGCGACGCG  >  NC_002947/5981318‑5981616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.