New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6050814 =	104 (1.110)	5 (0.060)	5/238	NT	5.2%	coding (1620/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	NC_002947	6050855 =	84 (0.950)					coding (1661/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase

TGCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6050968‑6050814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcg‑‑‑‑‑cCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGT  >  NC_002947/6050855‑6051003                                                                                                                                                                                                                                                                                                                        TGCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATTGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGC                                                                                                                                                                  <  2:1633080/150‑1  GCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCG                                                                                                                                                                 <  1:1286104/150‑1  GCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCG                                                                                                                                                                 <  1:2212437/150‑1  GCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCG                                                                                                                                                                 >  2:507750/1‑150    CCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGC                                                                                                                                                               >  1:763004/1‑150     CTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG                                                                                                                                                              >  1:1060657/1‑150      TTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑C                                                                                                                                                        <  1:335166/150‑1                                                      CAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGC                                                                                                                                                               >  1:1682325/1‑100                                                      CAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGC                                                                                                                                                               <  2:1682325/100‑1                                                                                                     CAGNGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCGCGCGACCACGTAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTC                                                              >  2:1509562/1‑150                                                                                                              TTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCC                                               >  2:208595/1‑150                                                                                                                      CCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGA                                                                                  <  1:1700667/107‑1                                                                                                                      CCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGA                                                                                  >  2:1700667/1‑107                                                                                                                          CAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCGCGCGACCACGTAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAG                                         <  1:1509562/150‑1                                                                                                                                                         CG‑‑‑‑‑CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCA    <  1:1180481/150‑1                                                                                                                                                                CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGT  <  1:1287949/150‑1                                                                                                                                                                                                                                                                                                                        TGCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6050968‑6050814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcg‑‑‑‑‑cCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGT  >  NC_002947/6050855‑6051003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.