| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4344193 | 41 (0.950) | 4 (0.100) | 4/242 | NT | 10.4% | coding (1029/1149 nt) | PP_3817 | polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 4344219 | 30 (0.730) | coding (1055/1149 nt) | PP_3817 | polyamine ABC transporter ATP‑binding protein | |||||
TTGGAACGAGGTCACTGCCAAGGTTGGCGAAGTGCTGTTCCTGGGTGAAAGCCAGACCTGCCATGTGGTGACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4344085‑4344193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtcgCCCGGCTGCATCGGCATGCCCGCCGCCGACAGTGCCTTCACGGTCAGCTCGGTACCCCCTGCAGTCACCACATGGCAGGTCTGGCTTTCACCCAGGAACAGCACTTCGCCAACCTTGGCAGTGACCTCGTTCCAACCCGCCGGCAG < NC_002947/4344219‑4344074 TTGGAACGAGGTCACTGCCAAGGTTGGCGAAGTGCTGTTCCTGGGTGAAAGCCAGACCTGCCATGTGGTGACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGCCCGGCTGCATCGGCATGCCCGCCGCCGACAGT < 1:778086/142‑1TTGGAACGAGGTCACTGCCAAGGTTGGCGAAGTGCTGTTCCTGGGTGAAAGCCAGACCTGCCATGTGGTGACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGCCCGGCTGCATCGGCATGCCCGCCGCCGACAGT > 2:778086/1‑142 AACGAGGTCACTGCCAAGGTTGGCGAAGTGCTGTTCCTGGGTGAAAGCCAGACCTGCCATGTGGTGACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGCCCGGCTGCATCGGCATGCCCGCCGCCGACA < 1:691848/136‑1 AACGAGGTCACTGCCAAGGTTGGCGAAGTGCTGTTCCTGGGTGAAAGCCAGACCTGCCATGTGGTGACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCGCCCGGCTGCATCGGCATGCCCGCCGCCGACA > 2:691848/1‑136 TGTCGCCCGGCTGCATCGGCATGCCCGCCGCCGACAGTGCCTTCACGGTCAGCTCGGTACCCCCTGCAGTCACCACATGGCAGGTCTGGCTTTCACCCAGGAACAGCACTTCGCCAACCTTGGCAGTGACCTCGTTCCAACCCGCCGGCA < 1:200788/150‑1 GTCGCCCGGCTGCATCGGCATGCCCGCCGCCGACAGTGCCTTCACGGTCAGCTCGGTACCCCCTGCAGTCACCACATGGCAGGTCTGGCTTTCACCCAGGAACAGCACTTCGCCAACGTTGGCAGTGACCTCGGTCCAACCCGCCGGCAG > 1:72264/1‑150 TTGGAACGAGGTCACTGCCAAGGTTGGCGAAGTGCTGTTCCTGGGTGAAAGCCAGACCTGCCATGTGGTGACTGCAGGGGGTACCGAGCTGACCGTGAAGGCACTGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4344085‑4344193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtcgCCCGGCTGCATCGGCATGCCCGCCGCCGACAGTGCCTTCACGGTCAGCTCGGTACCCCCTGCAGTCACCACATGGCAGGTCTGGCTTTCACCCAGGAACAGCACTTCGCCAACCTTGGCAGTGACCTCGTTCCAACCCGCCGGCAG < NC_002947/4344219‑4344074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |