New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5059687 =	43 (0.990)	3 (0.070)	3/242	NT	7.1%	coding (1195/1581 nt)	PP_4458	opine ABC transporter substrate‑binding protein
	?	NC_002947	5059708 =	37 (0.900)					coding (1174/1581 nt)	PP_4458	opine ABC transporter substrate‑binding protein

GGTTAAAACTCAAATCGGTTGTTTCCAACGCGGCCCCGCAATTGCCGATCATGGAGATTATCCAAGCCCAGCTGGCCAAGGCAGGTATCACCTTGGAAATGGAAGTCGTG‑GATCACGCGACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5059809‑5059687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacttCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCTGGCCAACAAGGCTTTCGCGTGCGCA  >  NC_002947/5059708‑5059853                                                                                                                                                                                                                                                                                GGTTAAAACTCAAATCGGTTGTTTCCAACGCGGCCCCGCAATTGCCGATCATGGAGATTATCCAAGCCCAGCTGGCCAAGGCAGGTATCACCTTGGAAATGGAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGG                                                                                                                         <  1:474466/150‑1          TCAAATCGGTTGTTTCCAACGCGGCCCCGCAATTGCCGATCATGGAGATTATCCAAGCCCAGCTGGCCAAGGCAGGTATCACCTTGGAAATGGAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTG                                                                                                                          >  1:254247/1‑140          TCAAATCGGTTGTTTCCAACGCGGCCCCGCAATTGCCGATCATGGAGATTATCCAAGCCCAGCTGGCCAAGGCAGGTATCACCTTGGAAATGGAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTG                                                                                                                          <  2:254247/140‑1                                                                                                                         cCTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCTGGCCAACAAGGCTTTCGCGTGCGCA  <  2:816425/149‑1                                                                                                                           TTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTT                                                                        <  1:410027/78‑1                                                                                                                           TTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTT                                                                        >  2:410027/1‑78                                                                                                                                                                                                                                                                                GGTTAAAACTCAAATCGGTTGTTTCCAACGCGGCCCCGCAATTGCCGATCATGGAGATTATCCAAGCCCAGCTGGCCAAGGCAGGTATCACCTTGGAAATGGAAGTCGTG‑GATCACGCGACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5059809‑5059687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacttCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCTGGCCAACAAGGCTTTCGCGTGCGCA  >  NC_002947/5059708‑5059853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.