New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5059687 =	43 (0.990)	3 (0.070)	3/242	NT	7.1%	coding (1195/1581 nt)	PP_4458	opine ABC transporter substrate‑binding protein
	?	NC_002947	5059708 =	37 (0.900)					coding (1174/1581 nt)	PP_4458	opine ABC transporter substrate‑binding protein

TGAGCAATGTCCGAAATTC‑GACATTGCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCT  >  NC_002947/5059538‑5059828                                                                                                                                                       |                                                                                                                                               gctgCAATGT‑CGAATTTCGGACATTGCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCCTGACGGCTTTTGGCCTGGTa                                                                                                                                                >  2:885871/4‑150 (MQ=255)     tgcgcacgcgaaagccttgttggccagcgcgggttatcccaacgggttaaaactcaaatcggttgtttccaacgcggccccgcaattgccgatcatggagattatccaagcccagctggccaaggcaggtatcaccttggaaatggAagg                                                                                                                                             <  2:816425‑M1/4‑2 (MQ=255)       aTGTCCGAAATTC‑GACATTGCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTcgc                                                                                                                                          <  2:385757/150‑1 (MQ=255)        tGTCCGAAATTC‑GACATTGCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTcgcg                                                                                                                                         <  1:617178/150‑1 (MQ=255)         gTCCGAAATTC‑GACATTGCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGt                                                                                                                                        <  2:147698/150‑1 (MQ=255)                     gACATTGCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAGACGCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATT‑CACGACt                                                                                                                            >  1:816425/1‑150 (MQ=255)                     gACATTGCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACt                                                                                                                            >  1:547706/1‑150 (MQ=255)                           gCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGAGCTATGCTCTTGAACAGTTATGGGGTGTTAAATCGCGGGATC‑CACGACTTCCAtt                                                                                                                      >  2:966587/1‑150 (MQ=255)                                gggTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCaa                                                                                                                 <  2:993151/150‑1 (MQ=255)                                gggTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCCCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCaa                                                                                                                 <  1:572900/150‑1 (MQ=255)                                      gcCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGAt                                                                                                           >  2:717487/1‑150 (MQ=255)                                            ggCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCAAAATAAAAGGTGATACCTGc                                                                                                     >  2:284834/1‑150 (MQ=255)                                                     cGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAg                                                                                            >  2:485270/1‑150 (MQ=255)                                                       aaTCGTAAAACTCTGTCAGCCAGTGGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCt                                                                                          >  2:753395/1‑150 (MQ=255)                                                            tAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCt                                                                                     >  1:219348/1‑150 (MQ=255)                                                             aaaaCTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCCTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCtt                                                                                    <  1:885871/150‑1 (MQ=255)                                                              aaaCTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTg                                                                                   <  2:547706/150‑1 (MQ=255)                                                              aaaCTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTg                                                                                   <  1:1017053/150‑1 (MQ=255)                                                               aaCTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTgg                                                                                  <  2:1110049/150‑1 (MQ=255)                                                                    tGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAAt                                                                             >  1:1009116/1‑150 (MQ=255)                                                                      tCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAAtct                                                                           >  2:1066054/1‑150 (MQ=255)                                                                        aGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGTTCTGGTTTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTcc                                                                         <  2:870725/150‑1 (MQ=255)                                                                         gCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCa                                                                        <  1:897402/150‑1 (MQ=255)                                                                           aacgcggccccgcaattgccgatcatggagattatccaagcccagctggccaaggcaggtatcaccttggaaatggaa                                                                                                                                               <  1:410027‑M1/2‑1 (MQ=255)                                                                           aacgcggccccgcaattgccgatcatggagattatccaagcccagctggccaaggcaggtatcaccttggaaatggaa                                                                                                                                               >  2:410027‑M1/77‑78 (MQ=255)                                                                               agtCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGc                                                                                               <  2:1108725/121‑1 (MQ=255)                                                                               agtCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGc                                                                                               >  1:1108725/1‑121 (MQ=255)                                                                                gtCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGGTCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCgg                                                                 <  1:284834/150‑1 (MQ=255)                                                                                   ggCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCaa                                                              >  2:667683/1‑150 (MQ=255)                                                                                    gcgcCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCgg                                                                 <  1:235408/146‑1 (MQ=255)                                                                                    gcgcCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCgg                                                                 >  2:235408/1‑146 (MQ=255)                                                                                        ccGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCg                                                         >  1:555170/1‑150 (MQ=255)                                                                                         cGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCgg                                                        <  2:1118567/150‑1 (MQ=255)                                                                                             tatCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGcc                                                    >  2:323254/1‑150 (MQ=255)                                                                                                     agcaCCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGa                                            <  1:277194/150‑1 (MQ=255)                                                                                                      gcaCCGTAAAACACGATCGCGCTCTCGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCCGCAATTGCGGGGCCGCGTTGGaa                                           <  2:555170/150‑1 (MQ=255)                                                                                                          cGTAAAAAACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTATGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAaacaa                                       <  2:412384/150‑1 (MQ=255)                                                                                                               aaCACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCggg                                                       >  1:724542/1‑129 (MQ=255)                                                                                                               aaCACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCggg                                                       <  2:724542/129‑1 (MQ=255)                                                                                                                   cGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGa                              <  1:966587/150‑1 (MQ=255)                                                                                                                   cGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATGTGa                              <  2:219348/150‑1 (MQ=255)                                                                                                                          gcTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTaa                       <  1:753395/150‑1 (MQ=255)                                                                                                                          gcTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTaa                       <  1:717487/150‑1 (MQ=255)                                                                                                                            ccaaggcaggtatcaccttggaaatggAAGTCGTG‑GATCACGCGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAAcc                     <  1:474466‑M1/123‑1 (MQ=255)                                                                                                                             caaggcaggtatcaccttggaaatggAAGTCGTG‑GATCACGCGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGa                              <  2:254247‑M1/114‑1 (MQ=255)                                                                                                                             caaggcaggtatcaccttggaaatggAAGTCGTG‑GATCACGCGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGa                              >  1:254247‑M1/27‑140 (MQ=255)                                                                                                                                      aCGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCACTTGCGGGGCCGCGTTGGAAACAACCGATTTGAGt                            >  1:345200/1‑133 (MQ=255)                                                                                                                                      aCGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGt                            <  2:345200/133‑1 (MQ=255)                                                                                                                                      aCGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATa           >  1:7583/1‑150 (MQ=255)                                                                                                                                               ggCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCt  <  1:485270/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                               TGAGCAATGTCCGAAATTC‑GACATTGCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCT  >  NC_002947/5059538‑5059828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.