| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5059687 = | 43 (0.990) | 3 (0.070) | 3/242 | NT | 7.1% | coding (1195/1581 nt) | PP_4458 | opine ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5059708 = | 37 (0.900) | coding (1174/1581 nt) | PP_4458 | opine ABC transporter substrate‑binding protein | |||||
GCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCTGGCCAACAAGGCTTTCGCGTGCGCA > NC_002947/5059563‑5059853 | gCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGAGCTATGCTCTTGAACAGTTATGGGGTGTTAAATCGCGGGATC‑CACGACTTCCAtt > 2:966587/1‑150 (MQ=255) gggTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCaa < 2:993151/150‑1 (MQ=255) gggTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCCCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCaa < 1:572900/150‑1 (MQ=255) gcCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGAt > 2:717487/1‑150 (MQ=255) ggCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCAAAATAAAAGGTGATACCTGc > 2:284834/1‑150 (MQ=255) ggttaaaactcaaatcggttgtttccaacgcggccccgcaattgccgatcatggagattatccaagcccagctggccaaggcaggtatcaccttggaaatggaagtcgcgtgatccacgacttCCATTTCCAAGGTGATACCTGCCTTgg < 1:474466‑M2/27‑1 (MQ=255) cGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAg > 2:485270/1‑150 (MQ=255) aaTCGTAAAACTCTGTCAGCCAGTGGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCt > 2:753395/1‑150 (MQ=255) tcaaatcggttgtttccaacgcggccccgcaattgccgatcatggagattatccaagcccagctggccaaggcaggtatcaccttggaaatggaagtcgcgtgatccacgacttCCATTTCCAAGGTGATACCTGCCTTg > 1:254247‑M2/115‑140 (MQ=255) tcaaatcggttgtttccaacgcggccccgcaattgccgatcatggagattatccaagcccagctggccaaggcaggtatcaccttggaaatggaagtcgcgtgatccacgacttCCATTTCCAAGGTGATACCTGCCTTg < 2:254247‑M2/26‑1 (MQ=255) tAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCt > 1:219348/1‑150 (MQ=255) aaaaCTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCCTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCtt < 1:885871/150‑1 (MQ=255) aaaCTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTg < 1:1017053/150‑1 (MQ=255) aaaCTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTg < 2:547706/150‑1 (MQ=255) aaCTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTgg < 2:1110049/150‑1 (MQ=255) tGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAAt > 1:1009116/1‑150 (MQ=255) tCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAAtct > 2:1066054/1‑150 (MQ=255) aGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGTTCTGGTTTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTcc < 2:870725/150‑1 (MQ=255) gCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCa < 1:897402/150‑1 (MQ=255) agtCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGc > 1:1108725/1‑121 (MQ=255) agtCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGc < 2:1108725/121‑1 (MQ=255) gtCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGGTCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCgg < 1:284834/150‑1 (MQ=255) ggCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCaa > 2:667683/1‑150 (MQ=255) gcgcCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCgg < 1:235408/146‑1 (MQ=255) gcgcCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCgg > 2:235408/1‑146 (MQ=255) ccGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCg > 1:555170/1‑150 (MQ=255) cGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCgg < 2:1118567/150‑1 (MQ=255) tatCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGcc > 2:323254/1‑150 (MQ=255) agcaCCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGa < 1:277194/150‑1 (MQ=255) gcaCCGTAAAACACGATCGCGCTCTCGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCCGCAATTGCGGGGCCGCGTTGGaa < 2:555170/150‑1 (MQ=255) cGTAAAAAACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTATGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAaacaa < 2:412384/150‑1 (MQ=255) aaCACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCggg < 2:724542/129‑1 (MQ=255) aaCACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCggg > 1:724542/1‑129 (MQ=255) cGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGa < 1:966587/150‑1 (MQ=255) cGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATGTGa < 2:219348/150‑1 (MQ=255) gcTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTaa < 1:753395/150‑1 (MQ=255) gcTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTaa < 1:717487/150‑1 (MQ=255) ccaaggcaggtatcaccttggaaatggAAGTCGTG‑GATCACGCGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAAcc < 1:474466‑M1/123‑1 (MQ=255) caaggcaggtatcaccttggaaatggAAGTCGTG‑GATCACGCGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGa < 2:254247‑M1/114‑1 (MQ=255) caaggcaggtatcaccttggaaatggAAGTCGTG‑GATCACGCGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGa > 1:254247‑M1/27‑140 (MQ=255) aCGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCACTTGCGGGGCCGCGTTGGAAACAACCGATTTGAGt > 1:345200/1‑133 (MQ=255) aCGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGt < 2:345200/133‑1 (MQ=255) aCGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATa > 1:7583/1‑150 (MQ=255) ggCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCt < 1:485270/150‑1 (MQ=255) tC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCGATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATaa < 1:707717/123‑1 (MQ=255) tC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATaa > 2:707717/1‑123 (MQ=255) c‑cACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCTGGCCAACCAGGCTATCGCGt > 2:140196/1‑150 (MQ=255) cACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCTGGCCAACAAGGCTTTCGCGTg > 2:365154/1‑150 (MQ=255) ccttCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCTGGCCAACAAGGCTTTCGCGTGCGCa < 2:816425‑M2/146‑1 (MQ=255) ttCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGtt > 2:410027‑M2/3‑78 (MQ=255) ttCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGtt < 1:410027‑M2/76‑1 (MQ=255) | GCAGCGGGTGCGCCGATGGCAGAAGCCGAATCGTAAAACTCTGTCAGCCAGTAGTCGGCGCCCGGATATCGAGCAGCACCGTAAAACACGATCGCGCTCTGGTCTTGACGGCTTTTGGCCTGGTAAGTCGCGTGATC‑CACGACTTCCATTTCCAAGGTGATACCTGCCTTGGCCAGCTGGGCTTGGATAATCTCCATGATCGGCAATTGCGGGGCCGCGTTGGAAACAACCGATTTGAGTTTTAACCCGTTGGGATAACCCGCGCTGGCCAACAAGGCTTTCGCGTGCGCA > NC_002947/5059563‑5059853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |