New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5174387	39 (0.900)	3 (0.070)	3/240	NT	7.2%	coding (641/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	= 5174420	41 (1.000)					coding (608/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase

GCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5174235‑5174387 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgtCGCTGAACCTCGATGACATCGCGGTGCTGCAGTACACCGG  <  NC_002947/5174420‑5174381                                                                                                                                                                                                   GCGGCGCAATCATCACTTCCTGGCCGCCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGG                                             <  2:122430/150‑1  CGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCATGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGTGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGT                                            <  1:414457/150‑1            ATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT                                          <  1:318871/142‑1            ATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT                                          >  2:318871/1‑142                                            CCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTCGCTGAACCTCGATGACATCGCGGTGCTGCAGTACACCGG  <  1:488612/150‑1                                                                                              CCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTCGCTGAACCTCGATGACATCGCGGTGCTGCAGTACAC     <  1:803007/97‑1                                                                                              CCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTCGCTGAACCTCGATGACATCGCGGTGCTGCAGTACAC     >  2:803007/1‑97                                                                                                          CATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT                                          >  1:690281/1‑48                                                                                                          CATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT                                          <  2:690281/48‑1                                                                                                                                                                                                   GCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5174235‑5174387 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgtCGCTGAACCTCGATGACATCGCGGTGCTGCAGTACACCGG  <  NC_002947/5174420‑5174381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.