New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5174387	39 (0.900)	3 (0.070)	3/240	NT	7.2%	coding (641/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	= 5174420	41 (1.000)					coding (608/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase

GCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCAACTTGTCGACCACGGTGTTGA  >  NC_002947/5174240‑5174534                                                                                                                                                    |                                                                                                                                                    gcAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGTCCGGTGGTGCCGCCGGTGTAc                                                                                                                                                   <  2:911438/150‑1 (MQ=255)   aaTCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTg                                                                                                                                                 >  2:81747/1‑150 (MQ=255)     tcatcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTgca                                                                                                                                               <  1:492359/150‑1 (MQ=255)       atcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT                                                                                                                                                     >  2:318871‑M1/1‑142 (MQ=255)       atcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT                                                                                                                                                     <  1:318871‑M1/142‑1 (MQ=255)          aCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCAcc                                                                                                                                          <  1:371500/150‑1 (MQ=255)             tCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGTCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACcgcg                                                                                                                                       >  1:544561/1‑150 (MQ=255)               cTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGAt                                                                                                                                     <  2:30109/150‑1 (MQ=255)               cTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGAt                                                                                                                                     <  2:447550/150‑1 (MQ=255)                  gCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTc                                                                                                                                  >  1:625889/1‑150 (MQ=255)                        cTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAg                                                                                                                            >  2:499526/1‑150 (MQ=255)                               agcTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGTCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGAACCGCGATGTCATCGAGGTTCAGc                                                                                                                     <  1:1056227/150‑1 (MQ=255)                                       cccATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTcgctgaacctcgatgacatcgcggtgctgcagtacaccgg                                                                                                             <  1:488612‑M1/150‑41 (MQ=255)                                           tCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTg                                                                                                         <  1:499526/150‑1 (MQ=255)                                           tCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTg                                                                                                         <  2:287359/150‑1 (MQ=255)                                              gtgCCGTGTTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGTTGCCGCCGGTTTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGc                                                                                                      <  1:42207/148‑1 (MQ=255)                                                          gagaAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCgg                                                                                          <  1:506820/150‑1 (MQ=255)                                                            gaAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGcc                                                                                        <  2:98125/150‑1 (MQ=255)                                                               gCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTc                                                                                     >  2:631268/1‑150 (MQ=255)                                                                        cACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCAc                                                                            >  1:880412/1‑150 (MQ=255)                                                                           ttGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTg                                                                         >  1:109454/1‑150 (MQ=255)                                                                              cagcaTGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCtt                                                                      >  2:536787/1‑150 (MQ=255)                                                                                 caTGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGaa                                                                   <  2:625889/150‑1 (MQ=255)                                                                                  aTGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAAc                                                                  <  1:291256/150‑1 (MQ=255)                                                                                      tGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCa                                                              <  1:631268/150‑1 (MQ=255)                                                                                         ccaccaGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTcgctgaacctcgatgacatcgcggtgctgcagtacac                                                                                                                >  2:803007‑M1/1‑60 (MQ=255)                                                                                         ccaccaGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTcgctgaacctcgatgacatcgcggtgctgcagtacac                                                                                                                <  1:803007‑M1/97‑38 (MQ=255)                                                                                           accaGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGcc                                                         >  2:886632/1‑150 (MQ=255)                                                                                           accaGGCTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGcc                                                         >  2:727418/1‑150 (MQ=255)                                                                                                gTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACa                                                                                                  <  2:383141/104‑1 (MQ=255)                                                                                                gTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACa                                                                                                  >  1:383141/1‑104 (MQ=255)                                                                                                 ttGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGc                                                   >  1:1064596/1‑150 (MQ=255)                                                                                                     cATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAAcc                                               >  1:101980/1‑150 (MQ=255)                                                                                                     cATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT                                                                                                                                                     <  2:690281‑M1/48‑1 (MQ=255)                                                                                                     cATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGT                                                                                                                                                     >  1:690281‑M1/1‑48 (MQ=255)                                                                                                             aGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGcc                                       <  2:989226/150‑1 (MQ=255)                                                                                                             aGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGACATCGAGGTTCAGCGACCGCGTGTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGcc                                       >  1:135360/1‑150 (MQ=39)                                                                                                                        cTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCAtctt                            <  1:81472/150‑1 (MQ=255)                                                                                                                         ttGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTGTGGGCGACCGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACTGCACCGCCTGGGGCAACCGGTAGGCCGGCACCAtcttc                           <  1:629373/150‑1 (MQ=255)                                                                                                                             ccAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCa                       >  2:724510/1‑150 (MQ=255)                                                                                                                              cAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCaa                      <  1:727418/150‑1 (MQ=255)                                                                                                                              cAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCaa                      >  2:961281/1‑150 (MQ=255)                                                                                                                               aGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCAAc                     >  2:783584/1‑150 (MQ=255)                                                                                                                                    ggtggtGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCAACTTGTc                <  2:880412/150‑1 (MQ=255)                                                                                                                                       ggtgCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCAtct                             >  2:627631/1‑134 (MQ=255)                                                                                                                                       ggtgCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCAtct                             <  1:627631/134‑1 (MQ=255)                                                                                                                                           ccgccgGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCAACTTGTCGACCACg         <  1:783584/150‑1 (MQ=255)                                                                                                                                             gccgGTGTACTGCAGAACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCAACTTGTCGCCCACGgt       >  1:934909/1‑150 (MQ=255)                                                                                                                                              ccgGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgctggcctgcttctcgcagcacggccccgatggg      <  1:488612‑M2/150‑111 (MQ=255)                                                                                                                                                 gtgtACTGCAGCACCGCGATGTCATCGAGGTTCAGCGacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtgg                                                        >  2:803007‑M2/1‑37 (MQ=255)                                                                                                                                                 gtgtACTGCAGCACCGCGATGTCATCGAGGTTCAGCGacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtgg                                                        <  1:803007‑M2/97‑61 (MQ=255)                                                                                                                                                  tgtNCTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCAACTTGTCGACCACGGTGTTGa  >  2:694788/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCAGCACCTGCTTGAACGGCACCGCCTGGGGCAACCGGTAGGCCGGCACCATCTTCTTCAACTTGTCGACCACGGTGTTGA  >  NC_002947/5174240‑5174534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.