New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5454666	NA (NA)	3 (0.070)	3/244	NT	8.9%	coding (1277/1329 nt)	PP_4791	transposase
	?	NC_002947	= 5552936	32 (0.740)					intergenic (+551/+110)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein

CCAGAAGCCAAGACCGGCAGGTCCGg‑‑‑‑‑gctt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5454642‑5454666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G‑‑‑‑‑GCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACCAGACGTACCAACTGATGCGCAGTGACTTATGAGAGCGCGAAAATGAGTACCGAAGCATTGACGATAATCGGATCTATCCTGCT  <  NC_002947/5552936‑5552783                                                                                                                                                                                          CCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACCAGACGTACAAACTTATGCGCAGTGACTTATGAGAGCGCGAAAATGAGTA                                    >  1:790046/1‑150     AAGCCAAGACCGGCAGGTCCGG‑‑‑‑‑GCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACC                                                                                     <  1:889998/92‑1     AAGCCAAGACCGGCAGGTCCGG‑‑‑‑‑GCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACC                                                                                     >  2:889998/1‑92                                   TCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACCAGACGTACCAACTGATGCGCAGTGACTTATGAGAGCGCGAAAATGAGTACCGAAGCATTGACGATAATCGGATCTATCCTGCT  >  2:799385/1‑150                                                                                                                                                                                          CCAGAAGCCAAGACCGGCAGGTCCGg‑‑‑‑‑gctt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5454642‑5454666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G‑‑‑‑‑GCTTCTGGTTCGGAATTCCTCAAGACCTTGTTCAGCATAAGCCTGCTTCTTGGTGAACCGGCTGTACACCAGACGTACCAACTGATGCGCAGTGACTTATGAGAGCGCGAAAATGAGTACCGAAGCATTGACGATAATCGGATCTATCCTGCT  <  NC_002947/5552936‑5552783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.