New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5454666 | NA (NA) | 3 (0.070) | 3/244 | NT | 8.9% | coding (1277/1329 nt) | PP_4791 | transposase |
? | NC_002947 | = 5552936 | 32 (0.740) | intergenic (+551/+110) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein |
ATCCGATTATCGTCAATGCTTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAAT > NC_002947/5552793‑5553084 | aTCCGATTATCGTCAATGCTTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAAGAATTCCGAACCATTAGC‑‑‑‑‑CAAGAcc > 2:907183/1‑150 (MQ=255) cGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTc < 2:1036390/150‑1 (MQ=255) tACTCATTTTCGCGCTCTCATAAGTCACTGCGCATAAGTTTGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCAAAGCCcggacctgccggtcttggcttctgg > 1:790046‑M2/1‑125 (MQ=255) cATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGc < 2:490999/150‑1 (MQ=255) tcATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTgggg > 1:63894/1‑150 (MQ=255) aTAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCggg > 1:210204/1‑119 (MQ=255) aTAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCggg < 2:210204/119‑1 (MQ=255) gTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAg > 2:811646/1‑150 (MQ=255) gcATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTcc < 1:627561/104‑1 (MQ=255) gcATCAGTTGGTACGTCTGGTGTACAGCCGGTGCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTcc > 2:627561/1‑104 (MQ=255) tCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGgctgc < 1:819537/150‑1 (MQ=255) ttGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGa > 2:775004/1‑150 (MQ=255) gTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAgtg > 1:154521/1‑150 (MQ=255) tGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCg > 2:973564/1‑100 (MQ=255) tGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCg < 1:973564/100‑1 (MQ=255) ggTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑Ccggacctgccggtcttggctt > 2:889998‑M2/1‑71 (MQ=255) ggTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑Ccggacctgccggtcttggctt < 1:889998‑M2/92‑22 (MQ=255) gtgtACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGaaaa > 1:602872/1‑150 (MQ=255) tgtACAGCCGGTTCAACAAGAAGCAGGCTTATGCTGAACAAGGTGTTCAGCAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTGGGCTTCGTAAAGCCCGGCAACTGGGGTTTCGTCTGGTGGTTGTTTGAGTGTTGAGaaaaa > 2:1002560/1‑149 (MQ=17) cAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATg < 2:602872/150‑1 (MQ=255) aGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATgg < 1:811646/150‑1 (MQ=255) ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGtt > 1:333460/1‑111 (MQ=255) ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGtt < 2:333460/111‑1 (MQ=255) ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGa > 1:130073/1‑130 (MQ=255) ccGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGa < 2:130073/130‑1 (MQ=255) cACCAAGAAGCAGTCTGATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCAtt < 2:179544/150‑1 (MQ=255) cAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTg > 1:539278/1‑150 (MQ=255) agCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTGTGa < 2:591388/150‑1 (MQ=255) cAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGAcc > 1:121393/1‑150 (MQ=255) cAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGAcc > 1:680995/1‑150 (MQ=255) gCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTAc < 1:675327/150‑1 (MQ=255) gCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGACCGTAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTAc < 1:350644/150‑1 (MQ=255) cAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAg > 1:838338/1‑150 (MQ=255) aTTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAg < 1:775004/150‑1 (MQ=255) aGAAGG‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACAAGGGCTTACCTCAAGTAATCTATCCAAAGAAAAAAAAGa < 2:346787/150‑1 (MQ=255) c‑‑‑‑‑cAAGCCCGGCATGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAACACAATGTGTTGCATGCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAAt < 1:429078/150‑1 (MQ=25) | ATCCGATTATCGTCAATGCTTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGGTGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGC‑‑‑‑‑CAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAAT > NC_002947/5552793‑5553084 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |