New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5454666 | NA (NA) | 3 (0.070) | 3/244 | NT | 8.9% | coding (1277/1329 nt) | PP_4791 | transposase |
? | NC_002947 | = 5552936 | 32 (0.740) | intergenic (+551/+110) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein |
TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGG > NC_002947/5454610‑5454815 | ttATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGc > 1:450373/1‑150 (MQ=11) aTGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCgg < 1:668129/150‑1 (MQ=32) tGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCggg > 1:221943/1‑150 (MQ=32) gTTAAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGt < 1:1117433/150‑1 (MQ=17) ttGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGC‑TAGAGAAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGtt > 1:790081/1‑150 (MQ=255) gtaaCAAGGTCTTGAGGAGTTCGAAACCAGAAGCAAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGttt < 2:790081/148‑1 (MQ=17) aCAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTAcc > 2:844052/1‑150 (MQ=35) cAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTAccc < 2:14143/150‑1 (MQ=34) gTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGa > 1:128163/1‑150 (MQ=35) tCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGaa < 2:54036/150‑1 (MQ=34) ttGAGGAGTTCGAAACCAGAAGCCGAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATa < 2:1096565/150‑1 (MQ=38) gaggagTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACg < 1:1054672/150‑1 (MQ=38) gaggagTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACg < 2:450373/150‑1 (MQ=38) gAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGACTACCGTATTcgcg < 2:221943/150‑1 (MQ=255) gAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTcgcg > 1:57146/1‑150 (MQ=255) gAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGAATTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTcgcg > 2:445361/1‑150 (MQ=255) aCCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCa > 2:643787/1‑150 (MQ=255) ccAGAAGCCAAGACCGGTAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCaa < 2:197444/150‑1 (MQ=255) ccAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAACGCCCGGAAATTCGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑ACACAATGGGAT‑CATTCTGGCGGGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCaa < 1:869500/150‑1 (MQ=14) aGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACg > 2:250649/1‑150 (MQ=255) gAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACgg < 2:8340/150‑1 (MQ=255) cAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAAc < 2:57146/150‑1 (MQ=255) aCCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAAcggcg < 1:209064/150‑1 (MQ=255) gggCTTTGCGAAGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTgg > 2:1082794/1‑150 (MQ=255) | TTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGA‑AAACAATGGGTTGCATT‑TTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGG > NC_002947/5454610‑5454815 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |