New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	709189 =	38 (0.880)	5 (0.120)	5/238	NT	12.1%	intergenic (+49/‑70)	murJ/ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase
	?	NC_002947	709216 =	37 (0.910)					intergenic (+76/‑43)	murJ/ribF	lipid II flippase/bifunctional riboflavin kinase/FMN adenylyltransferase

GGCTTGGGGCGCTGATCCTGGCGGGCGTCGTGACGTATTTTGGCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGCCACCATTGGCAACTTCGAC  >  NC_002947/709040‑709333                                                                                                                                                      |                                                                                                                                                 ggCTTGGGGCGCTGATCCTGGCGGGCGTCGTGACGTATTTTGGCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTg                                                                                                                                                  <  1:348514/150‑1 (MQ=255)  caggatggcctggtggccgcggtgaaccccgtcgaagttgccaatggtggcgacacagccccggtgctcggggcgcaggttgtgaagacctcgaaccagctgcataacgcgcttcttgctcataaagtggccgattataaccacacccgg                                                                                                                                                 >  1:148221‑M1/149‑150 (MQ=255)       ttgcctggtggccgcggtgaaccccgtcgaagttgccaatggtggcgacacagccccggtgctcggggcgcaggttgtgaagacctcgaaccagctgcataacgcgcttcttgctcataaagtggccgattataaccacacccGGGCgct                                                                                                                                            <  2:373072‑M1/7‑1 (MQ=255)        ggCGCTGATCCTGGCGGGCGTCGTGACGTATTTTGGCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTGGCAAGGCCTTGCACTCAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCgctg                                                                                                                                           <  1:689337/150‑1 (MQ=255)              gtggccgcggtgaaacccgtcgaagttgccaatggtggcgacacagccccggtgctcggggcgcaggttgtgaagacctcgaaccagctgcataacgcgcttcttgctcataaagtggccgattataaccacacctGGGCGCTGCTGCCt                                                                                                                                     >  2:256672‑M1/137‑150 (MQ=255)                tCCTGGCGGGCGTCGTGACGTATTTTGGCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGt                                                                                                                                   <  1:801711/150‑1 (MQ=255)                         gcgTCGTGACGTATTTTGGCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGGTGACAGGCAGCAgcgc                                                                                                                          <  1:450810/150‑1 (MQ=255)                                        ttGGCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTtata                                                                                                           >  1:200417/1‑150 (MQ=255)                                           gCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATc                                                                                                        <  2:232075/150‑1 (MQ=255)                                           gCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATc                                                                                                        <  2:232188/150‑1 (MQ=255)                                           gCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATc                                                                                                        <  2:492168/150‑1 (MQ=255)                                            cTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCg                                                                                                       >  2:1104026/1‑150 (MQ=255)                                            cTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCg                                                                                                       <  2:258548/150‑1 (MQ=255)                                             tGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTtata                                                                                                           <  1:1023999/145‑1 (MQ=255)                                             tGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTtata                                                                                                           >  2:1023999/1‑145 (MQ=255)                                                      cTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTAt                                                                                             <  1:464480/150‑1 (MQ=255)                                                      cTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTAt                                                                                             >  2:686717/1‑150 (MQ=255)                                                       tgtgtgGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATg                                                                                            >  2:1075888/1‑150 (MQ=255)                                                         tgtgGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCACAGCACACGTCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAg                                                                                          >  1:852044/1‑150 (MQ=255)                                                            ggCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCaa                                                                                       >  1:909244/1‑150 (MQ=255)                                                            ccccggtgctcggggcgcaggttgtgaagacctcgaaccagctgcataacgcgcttcttgctcataaagtggccgattataaccacacccGGGCgct                                                                                                                                            <  2:258928‑M1/7‑1 (MQ=255)                                                            ccccggtgctcggggcgcaggttgtgaagacctcgaaccagctgcataacgcgcttcttgctcataaagtggccgattataaccacacccGGGCgct                                                                                                                                            >  1:258928‑M1/91‑97 (MQ=255)                                                              cTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTCTAATCGGCCACTTTATGAGCaaga                                                                                     >  2:119031/1‑150 (MQ=255)                                                               ttCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCaagaa                                                                                    >  1:554778/1‑150 (MQ=255)                                                                    gCCCCGGCCTTTCGCGCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTCTTTGAGCGTCTCCGCCCTTGGGCGCTGCTGCTTGTCAAAAGCGCGGAGGTGGGGGTATAATCGGCCACTTTATGAGCAAGAAGcgcg                                                                               <  1:810114/150‑1 (MQ=255)                                                                      cccGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGtt                                                                             <  1:297641/150‑1 (MQ=255)                                                                      cccGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGtt                                                                             >  1:434773/1‑150 (MQ=255)                                                                            aTTTCGCTCGCGTTGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGGTTTTTGCATTCCACGCCGCCCTTGGGCGCTGGTGCTTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAg                                                                       <  1:498623/150‑1 (MQ=255)                                                                                cgctcgcAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTgg                                                                   <  1:555494/150‑1 (MQ=255)                                                                                   tcgcAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTc                                                                >  1:541470/1‑150 (MQ=255)                                                                                      cAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAg                                                             >  1:934861/1‑150 (MQ=255)                                                                                         ggCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTc                                                          >  1:150544/1‑150 (MQ=255)                                                                                           ccTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCtt                                                        <  2:434773/150‑1 (MQ=255)                                                                                             ttGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTca                                                      <  2:540494/150‑1 (MQ=255)                                                                                             ttGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTca                                                      <  2:957838/150‑1 (MQ=255)                                                                                                 aCTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAAc                                                  <  2:909244/150‑1 (MQ=255)                                                                                                       gCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTgcgc                                            >  1:239751/1‑150 (MQ=255)                                                                                                         ttttGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGccc                                          >  1:1110823/1‑150 (MQ=255)                                                                                                                         gTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCtgt                          <  2:92095/150‑1 (MQ=255)                                                                                                                            ggTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGc                                                                                         >  2:149419/1‑84 (MQ=255)                                                                                                                            ggTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGc                                                                                         <  1:149419/84‑1 (MQ=255)                                                                                                                            ggTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTc                       >  1:373072/1‑150 (MQ=255)                                                                                                                                 ttCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGccac                  <  1:372655/150‑1 (MQ=255)                                                                                                                                      gattataaccacacccGGGCGCTGGTGACAGGCAGCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGa                                                              >  2:145953‑M1/17‑101 (MQ=255)                                                                                                                                      gattataaccacacccGGGCGCTGGTGACAGGCAGCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGa                                                              <  1:145953‑M1/85‑1 (MQ=255)                                                                                                                                             accacacccGGGCGCTGGTGACAGGCAGCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGc                     >  1:87377‑M1/10‑135 (MQ=255)                                                                                                                                             accacacccGGGCGCTGGTGACAGGCAGCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGc                     <  2:87377‑M1/126‑1 (MQ=255)                                                                                                                                                gccCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGCCACCATTGGCAACTTCGa   <  1:1075888/150‑1 (MQ=255)                                                                                                                                                 cccTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGCCACCATTGGCAACTTCGAc  >  2:144588/1‑150 (MQ=255)                                                                                                                                                      GGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGCCACCAtt              >  1:589084‑M1/1‑133 (MQ=255)                                                                                                                                                      GGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGCCACCAtt              <  2:589084‑M1/133‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GGCTTGGGGCGCTGATCCTGGCGGGCGTCGTGACGTATTTTGGCTGCCTGTACCTGTGTGGCTTCCGGCCCCGGCATTTCGCTCGCAAGGCCTTGCACTGAGGCTTTTGGCGGGTCAGGCGTCGGTTTTTCGCATTCCACGCCGCCCTTGGGCGCTGCTGCCTGTCACCAGCGCCCGGGTGTGGTTATAATCGGCCACTTTATGAGCAAGAAGCGCGTTATGCAGCTGGTTCGAGGTCTTCACAACCTGCGCCCCGAGCACCGGGGCTGTGTCGCCACCATTGGCAACTTCGAC  >  NC_002947/709040‑709333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.