| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3835561 | 19 (0.440) | 3 (0.070) | 3/240 | NT | 12.3% | coding (6/879 nt) | PP_3387 | hypothetical protein |
| ? | NC_002947 | = 3835595 | 25 (0.610) | coding (40/879 nt) | PP_3387 | hypothetical protein | |||||
CTGTCAGCCAGCAGGCTACGGGTAGCAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAG > NC_002947/3835414‑3835708 | cTGTCAGCCAGCAGGCTACGGGTAGCAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATgcccag > 1:774570/1‑150 (MQ=255) tGTCAGCCAGCAGGCTACGGGTAGCAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATgcccagc > 2:25230/1‑150 (MQ=255) ccagcAGGCTACGGGTAGCAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCAttt < 1:734363/150‑1 (MQ=255) gTAGCAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGt > 1:399493/1‑150 (MQ=255) cAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATgccca < 2:687684/124‑1 (MQ=255) cAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATgccca > 1:687684/1‑124 (MQ=255) tCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCgggcat < 1:673342‑M2/150‑7 (MQ=255) aCGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCgcagcacatcgaccattgctctgacaaatgggctgggcatcag < 1:728682‑M1/150‑44 (MQ=255) aCGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCgcagcacatcgaccattgctctgacaaatgggctgggcatcag > 2:281382‑M1/1‑107 (MQ=255) cTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCgcagcacatcgaccattgctctgacaaatgggctgggcatcagcttg < 1:281382‑M1/150‑48 (MQ=255) tGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGAGGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCAc < 1:754602/150‑1 (MQ=255) aCCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGc < 2:399493/150‑1 (MQ=255) ccAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGcc > 2:961291/1‑150 (MQ=255) cAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCt > 1:571713/1‑150 (MQ=255) ccATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGa > 1:844055/1‑150 (MQ=255) tttGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAAt < 1:25230/150‑1 (MQ=255) cctgcTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAgc < 1:963615/123‑1 (MQ=255) cctgcTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAgc > 2:963615/1‑123 (MQ=255) gATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCaa > 1:367556/1‑150 (MQ=255) gATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCaa < 2:774570/150‑1 (MQ=255) cGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGaa < 1:76548/150‑1 (MQ=255) gCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCTGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGaac < 2:638943/150‑1 (MQ=255) ccACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATg > 2:1130561/1‑114 (MQ=255) ccACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATg < 1:1130561/114‑1 (MQ=255) ccACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGAcc > 2:443813/1‑150 (MQ=255) acacCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCgg > 1:832041/1‑150 (MQ=255) gAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCgct > 1:918779/1‑150 (MQ=255) cAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCgggcatcagcttgctccttccatgcgaatgatggtgtggccgtcggcgatcgccttgagcaggcagctgaggcaaatgggttcgccaggcgctggtacgccag < 1:281382‑M2/150‑104 (MQ=255) cTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCgggcatcagcttgctccttccatgcgaatgatggtgtggccgtcggcgatcgccttgagcaggcagctgaggcaaatgggttcgccaggcgctggtacgccagacgt < 1:728682‑M2/150‑108 (MQ=255) cTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCgggcatcagcttgctccttccatgcgaatgatggtgtggccgtcggcgatcgccttgagcaggcagctgaggcaaatgggttcgccaggcgctggtacgccagacgt > 2:281382‑M2/1‑43 (MQ=255) aTGCCCgcagcacatcgaccattgctctgacaaatgggctgggcatcagcttgctccttccatgcgaatgatggtgtggccgtcggcgatcgccttgagcaggcagctgaggcaaatgggttcgccaggcgctggtacgccagacgttga < 1:673342‑M1/150‑145 (MQ=255) cccagcccaTTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTgcag < 2:1013286/150‑1 (MQ=255) | CTGTCAGCCAGCAGGCTACGGGTAGCAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAG > NC_002947/3835414‑3835708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |