New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3835561	19 (0.440)	3 (0.070)	3/240	NT	12.3%	coding (6/879 nt)	PP_3387	hypothetical protein
	?	NC_002947	= 3835595	25 (0.610)					coding (40/879 nt)	PP_3387	hypothetical protein

TCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAGTTCAGCAACCTGCGGACAGCAGGCC  >  NC_002947/3835452‑3835742                                                                                                                                                |                                                                                                                                                    tCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCgggcat                                                                                                                                               <  1:673342‑M2/150‑7 (MQ=255)         tGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGAGGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCAc                                                                                                                                       <  1:754602/150‑1 (MQ=255)               aCCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGc                                                                                                                                 <  2:399493/150‑1 (MQ=255)                ccAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGcc                                                                                                                                >  2:961291/1‑150 (MQ=255)                 cAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCt                                                                                                                               >  1:571713/1‑150 (MQ=255)                                ccATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGa                                                                                                                >  1:844055/1‑150 (MQ=255)                                   tttGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAAt                                                                                                             <  1:25230/150‑1 (MQ=255)                                                cctgcTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAgc                                                                                                                           >  2:963615/1‑123 (MQ=255)                                                cctgcTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAgc                                                                                                                           <  1:963615/123‑1 (MQ=255)                                                            gATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCaa                                                                                    <  2:774570/150‑1 (MQ=255)                                                            gATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCaa                                                                                    >  1:367556/1‑150 (MQ=255)                                                               cGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGaa                                                                                 <  1:76548/150‑1 (MQ=255)                                                                gCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCTGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGaac                                                                                <  2:638943/150‑1 (MQ=255)                                                                        ccACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATg                                                                                                            <  1:1130561/114‑1 (MQ=255)                                                                        ccACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATg                                                                                                            >  2:1130561/1‑114 (MQ=255)                                                                        ccACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGAcc                                                                        >  2:443813/1‑150 (MQ=255)                                                                          acacCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCgg                                                                      >  1:832041/1‑150 (MQ=255)                                                                                           gAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCgct                                                     >  1:918779/1‑150 (MQ=255)                                                                                                  cAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCgggcatcagcttgctccttccatgcgaatgatggtgtggccgtcggcgatcgccttgagcaggcagctgaggcaaatgggttcgccaggcgctggtacgccag                                              <  1:281382‑M2/150‑104 (MQ=255)                                                                                                      cTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCgggcatcagcttgctccttccatgcgaatgatggtgtggccgtcggcgatcgccttgagcaggcagctgaggcaaatgggttcgccaggcgctggtacgccagacgt                                          <  1:728682‑M2/150‑108 (MQ=255)                                                                                                      cTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCgggcatcagcttgctccttccatgcgaatgatggtgtggccgtcggcgatcgccttgagcaggcagctgaggcaaatgggttcgccaggcgctggtacgccagacgt                                          >  2:281382‑M2/1‑43 (MQ=255)                                                                                                            cccagcccaTTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTgcag                                    <  2:1013286/150‑1 (MQ=255)                                                                                                                     tttGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAg                           >  1:837243/1‑150 (MQ=255)                                                                                                                        gTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAGTTc                        <  1:443813/150‑1 (MQ=255)                                                                                                                         tCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAGTTCa                       <  1:961291/150‑1 (MQ=255)                                                                                                                         tCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAGTTCa                       <  1:1066823/150‑1 (MQ=255)                                                                                                                           agagCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGAAAGCCCAGTTCAGc                     >  1:559971/1‑150 (MQ=255)                                                                                                                            gagCAATGGTCGATGTGCTGCGGGCATCCGATCAATATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCAACTGCTGCAGCAAGCCCAGTTCAGcc                    >  1:364812/1‑149 (MQ=255)                                                                                                                                 aTGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAGTTCAGCAACCTg               <  2:918779/150‑1 (MQ=255)                                                                                                                                              tgcGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAGTTCAGCAACCTGCGGACAGCAGGcc  >  2:882257/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                    TCAACGTCTGGCGTACCAGCGCCTGGCGAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGATGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGTGCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAGTTCAGCAACCTGCGGACAGCAGGCC  >  NC_002947/3835452‑3835742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.