New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4830927 =	35 (0.810)	4 (0.090)	4/248	NT	9.5%	coding (308/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4830978 =	42 (0.990)					coding (257/12954 nt)	pvdL	non‑ribosomal peptide synthetase

CCGGGTCCAAGCCATCCACTGCCAGCAGTTGGGGGGCGTTGTCCGCCGCCAGGGCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGC  >  NC_002947/4830778‑4831072                                                                                                                                                      |                                                                                                                                                      gagcaggccgtgctcagctaccgggacctcgaccagcgtgcacgcaccatcgccgccgccttgcaggggcgcgccagcttcggtgaccgtgccgtgctgttgttccccagcgggccagattacgtggcggcgttcttcggctgcctgtat                                                                                                                                                       <  1:322534‑M1/1‑1 (MQ=255) ccGGGTCCAAGCCATCCACTGCCAGCAGTTGGGGGGCGTTGTCCGCCGCCAGGGCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGtgct                                                                                                                                                       >  1:553728/1‑150 (MQ=255)    ggTCCAAGCCATCCACTGCCAGCAGTTGGGGGGCGTTGTCCGCCGCCAGGGCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTgctgct                                                                                                                                                    <  2:547927/150‑1 (MQ=255)            ccATCCACTGCCAGCAGTTGGGGGGCGTTGTCCGCCGCCAGGGCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGcg‑‑‑‑cgcg                                                                                                                                        <  2:390523/150‑1 (MQ=255)                       cagcagTTGGGGGGCGTTGTCCGCCGCCAGGGCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCcggcgg                                                                                                                             >  2:591263/1‑150 (MQ=255)                                              ccgccAGGGCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGc                                                                                                      <  1:1015134/150‑1 (MQ=255)                                              ccgccAGGGCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGc                                                                                                      <  1:857879/150‑1 (MQ=255)                                                  tcgccgccgccttgcaggggcgcgccagcttcggtgaccgtgccgtgctgttgttccccagcgggccagattacgtggcggcgttcttcggctgcctgtaTGCGGGCGTGATCGCGGACTCCGGCGGGTAGGCCAGCACCTCGATCACGc                                                                                                      >  2:596195‑M1/101‑150 (MQ=255)                                                      gCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTa                                                                                                                          <  1:362405/122‑1 (MQ=255)                                                      gCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTa                                                                                                                          >  2:362405/1‑122 (MQ=255)                                                         cgccttgcaggggcgcgccagcttcggtgaccgtgccgtgctgttgttccccagcgggccagattacgtggcggcgttcttcggctgcctgtaTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAgg                                                                                           >  1:234399‑M1/94‑150 (MQ=255)                                                              gCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGcc                                                                                      >  2:506321/1‑150 (MQ=255)                                                                 cTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCGTACAGGCAGCCgaa                                                                                   >  1:132096/1‑150 (MQ=255)                                                                  tGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCgaag                                                                                  <  2:371072/150‑1 (MQ=255)                                                                     aGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAAc                                                                               <  1:485689/150‑1 (MQ=255)                                                                          gTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAAcgccgc                                                                          <  2:35612/150‑1 (MQ=255)                                                                          gTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAAcgccgc                                                                          >  1:659981/1‑150 (MQ=255)                                                                           tCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACgccgcc                                                                         >  2:384005/1‑150 (MQ=255)                                                                              cgcAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACg                                                                      >  2:279746/1‑150 (MQ=255)                                                                               gcAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGt                                                                     >  2:53866/1‑150 (MQ=255)                                                                                  gcgcCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAAt                                                                  >  1:646659/1‑150 (MQ=255)                                                                                              tCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGcc                                                            >  1:584279/1‑144 (MQ=255)                                                                                              tCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGcc                                                            <  2:584279/144‑1 (MQ=255)                                                                                              gtgctgttgttccccagcgggccagattacgtggcggcgttcttcggctgcctgtaTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATa                                                                                               <  1:1037139‑M1/53‑1 (MQ=255)                                                                                              gtgctgttgttccccagcgggccagattacgtggcggcgttcttcggctgcctgtaTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATa                                                                                               >  2:1037139‑M1/57‑109 (MQ=255)                                                                                                agcagcagTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTgggg                                                    <  2:659981/150‑1 (MQ=255)                                                                                                  cagcagTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGaa                                                  >  2:532392/1‑150 (MQ=255)                                                                                                  cagcagTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGaa                                                  <  1:384005/150‑1 (MQ=255)                                                                                                       gTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCCGGCCCGCTGGGGAacaaca                                             >  2:172228/1‑150 (MQ=255)                                                                                                          gcgGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAgca                                          <  1:53866/150‑1 (MQ=255)                                                                                                           cgGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAgcac                                         <  1:296922/150‑1 (MQ=255)                                                                                                            ggCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAGCAgcacg                                        <  2:646659/150‑1 (MQ=255)                                                                                                            ggCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAgcacg                                        <  2:223577/150‑1 (MQ=255)                                                                                                                     tCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCa                               >  1:822376/1‑150 (MQ=255)                                                                                                                          gatgatCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCcggc                                                                                                                               <  2:296084/49‑1 (MQ=255)                                                                                                                          gatgatCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCcggc                                                                                                                               >  1:296084/1‑49 (MQ=255)                                                                                                                          gatgatCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCAGAAGAACGCCGCCACGTAATCTAGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGaa                          >  1:180453/1‑150 (MQ=255)                                                                                                                                 gACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGgcg                   >  1:554879/1‑150 (MQ=255)                                                                                                                                  aCAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGgcgc                  >  1:999661/1‑150 (MQ=255)                                                                                                                                    aGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGGACCGCGATCACGGCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGGCACCTAAGCTGgcgcgc                >  2:615588/1‑150 (MQ=255)                                                                                                                                             tCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATGACGCCCGCATACAGGCATCCGAAGACCGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAg       <  2:584058/150‑1 (MQ=255)                                                                                                                                               cTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAggc     >  1:786917/1‑150 (MQ=255)                                                                                                                                                  gTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAggcggc  >  2:1109968/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CCGGGTCCAAGCCATCCACTGCCAGCAGTTGGGGGGCGTTGTCCGCCGCCAGGGCTTCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCG‑‑‑‑CGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGC  >  NC_002947/4830778‑4831072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.