New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4830927 =	35 (0.810)	4 (0.090)	4/248	NT	9.5%	coding (308/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4830978 =	42 (0.990)					coding (257/12954 nt)	pvdL	non‑ribosomal peptide synthetase

TCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTCCCGGTAGCTGAGCACGGCCTGCTC  >  NC_002947/4830834‑4831126                                                                                                                                                 |                                                                                                                                                     cgccttgcaggggcgcgccagcttcggtgaccgtgccgtgctgttgttccccagcgggccagattacgtggcggcgttcttcggctgcctgtaTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAgg                                                                                                                                                 >  1:234399‑M1/94‑150 (MQ=255)      gCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGcc                                                                                                                                            >  2:506321/1‑150 (MQ=255)         cTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCGTACAGGCAGCCgaa                                                                                                                                         >  1:132096/1‑150 (MQ=255)          tGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCgaag                                                                                                                                        <  2:371072/150‑1 (MQ=255)             aGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAAc                                                                                                                                     <  1:485689/150‑1 (MQ=255)                  gTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAAcgccgc                                                                                                                                <  2:35612/150‑1 (MQ=255)                  gTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAAcgccgc                                                                                                                                >  1:659981/1‑150 (MQ=255)                   tCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACgccgcc                                                                                                                               >  2:384005/1‑150 (MQ=255)                      cgcAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACg                                                                                                                            >  2:279746/1‑150 (MQ=255)                       gcAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGt                                                                                                                           >  2:53866/1‑150 (MQ=255)                          gcgcCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAAt                                                                                                                        >  1:646659/1‑150 (MQ=255)                                      tCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGcc                                                                                                                  <  2:584279/144‑1 (MQ=255)                                      tCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGcc                                                                                                                  >  1:584279/1‑144 (MQ=255)                                      gtgctgttgttccccagcgggccagattacgtggcggcgttcttcggctgcctgtaTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATa                                                                                                                                                     <  1:1037139‑M1/53‑1 (MQ=255)                                      gtgctgttgttccccagcgggccagattacgtggcggcgttcttcggctgcctgtaTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATa                                                                                                                                                     >  2:1037139‑M1/57‑109 (MQ=255)                                        agcagcagTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTgggg                                                                                                          <  2:659981/150‑1 (MQ=255)                                          cagcagTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGaa                                                                                                        >  2:532392/1‑150 (MQ=255)                                          cagcagTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGaa                                                                                                        <  1:384005/150‑1 (MQ=255)                                               gTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCCGGCCCGCTGGGGAacaaca                                                                                                   >  2:172228/1‑150 (MQ=255)                                                  gcgGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAgca                                                                                                <  1:53866/150‑1 (MQ=255)                                                   cgGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAgcac                                                                                               <  1:296922/150‑1 (MQ=255)                                                    ggCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAGCAgcacg                                                                                              <  2:646659/150‑1 (MQ=255)                                                    ggCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAgcacg                                                                                              <  2:223577/150‑1 (MQ=255)                                                             tCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCa                                                                                     >  1:822376/1‑150 (MQ=255)                                                                  gatgatCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCAGAAGAACGCCGCCACGTAATCTAGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGaa                                                                                >  1:180453/1‑150 (MQ=255)                                                                         gACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGgcg                                                                         >  1:554879/1‑150 (MQ=255)                                                                          aCAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGgcgc                                                                        >  1:999661/1‑150 (MQ=255)                                                                            aGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGGACCGCGATCACGGCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGGCACCTAAGCTGgcgcgc                                                                      >  2:615588/1‑150 (MQ=255)                                                                                     tCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATGACGCCCGCATACAGGCATCCGAAGACCGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAg                                                             <  2:584058/150‑1 (MQ=255)                                                                                       cTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAggc                                                           >  1:786917/1‑150 (MQ=255)                                                                                        cctgtatgcgggcgtgatcgcggtgccggcctacccgccggagtccgcgcgccagcaTACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAggcg                                                          >  1:234399‑M2/58‑150 (MQ=255)                                                                                          gTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAggcggc                                                        >  2:1109968/1‑150 (MQ=255)                                                                                            tatgcgggcgtgatcgcggtgccggcctacccgccggagtccgcgcgccagcaTACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAgcac                                                                                               <  1:1037139‑M2/56‑1 (MQ=255)                                                                                            tatgcgggcgtgatcgcggtgccggcctacccgccggagtccgcgcgccagcaTACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAgcac                                                                                               >  2:1037139‑M2/54‑109 (MQ=255)                                                                                               gcgtgatcgaggtgctggcctacccgccggagtccgcgatcacgcccgcaTACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGa                                                   >  2:596195‑M2/51‑150 (MQ=255)                                                                                                 tgGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCt                                                                                                              <  2:17460/89‑1 (MQ=255)                                                                                                 tgGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCt                                                                                                              >  1:17460/1‑89 (MQ=255)                                                                                                         ggACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGgtgcgtgc                                         <  2:786917/150‑1 (MQ=255)                                                                                                           aCTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCAc                                       >  2:391945/1‑150 (MQ=255)                                                                                                             tCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGc                                     <  1:591263/150‑1 (MQ=255)                                                                                                               cggcggGTATGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTg                                   >  2:322534/1‑150 (MQ=255)                                                                                                               cggcggGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTg                                   <  2:693092/150‑1 (MQ=255)                                                                                                                         gCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTcc                         <  1:532392/150‑1 (MQ=255)                                                                                                                               aCCGCGATCCCGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTCCCGGTAg                   <  1:415217/150‑1 (MQ=255)                                                                                                                               aCCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAg                             >  1:663090/1‑140 (MQ=255)                                                                                                                               aCCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAg                             <  2:663090/140‑1 (MQ=255)                                                                                                                                ccGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTCCCGGTAGc                  >  1:600191/1‑150 (MQ=255)                                                                                                                                        aCGCGCGCATACCGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTCCCGGTAGCTGAGCACg          <  1:1077130/150‑1 (MQ=255)                                                                                                                                        aCGCCCGAATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTCCCGGTAGCTGAGCACg          >  1:375580/1‑150 (MQ=255)                                                                                                                                            ccGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTCCCGGTAGCTGAGCACGGCCt      >  2:433994/1‑150 (MQ=255)                                                                                                                                                aTACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTCCCGGTAGCTGAGCACGGCCTGCTc  <  1:322534‑M2/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TCCAGGCCCTGCAGGCTGTCGCGCAGCGCCGCCACGGTCAGCAGCAGTCGCGGCTCGGCGTCATCGATGATCGACAGCAAACGCTCCTGGTGCTGCTGGCGCGCGGACTCCGGCGGGTAGGCCGGCACCGCGATCACGCCCGCATACAGGCAGCCGAAGAACGCCGCCACGTAATCTGGCCCGCTGGGGAACAACAGCACGGCACGGTCACCGAAGCTGGCGCGCCCCTGCAAGGCGGCGGCGATGGTGCGTGCACGCTGGTCGAGGTCCCGGTAGCTGAGCACGGCCTGCTC  >  NC_002947/4830834‑4831126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.