New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 497685 | 55 (1.270) | 4 (0.100) | 4/244 | NT | 7.9% | coding (1554/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
? | NC_002947 | = 497738 | 41 (0.990) | coding (1607/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
GCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGC > NC_002947/497590‑497887 | gCTNTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTc < 2:697205‑M2/150‑2 (MQ=255) gtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCgg < 1:1062915/150‑1 (MQ=255) gtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCgg > 1:627205/1‑150 (MQ=255) gggTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCa > 1:940742/1‑150 (MQ=255) ggTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAg < 2:760334/150‑1 (MQ=255) gtATGCACCCGGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAGCCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAggg > 2:227926/2‑150 (MQ=255) gCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGaa < 1:449161/150‑1 (MQ=255) cACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAAc > 2:645231/1‑150 (MQ=255) cACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAAc < 1:752680/150‑1 (MQ=255) aCCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACa < 1:732793/150‑1 (MQ=255) gCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCt > 2:994347/1‑150 (MQ=255) aTCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGct < 2:754661/150‑2 (MQ=255) ccAGTACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCGGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa < 2:450008/150‑1 (MQ=255) ccAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGAACCGTGATAATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa > 1:923063/1‑150 (MQ=255) gCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGatat > 2:834817/1‑150 (MQ=255) cACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCCGAGGAGCA‑CCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATc > 1:1096103/1‑150 (MQ=255) cccGCAGATGGACCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTCTCACAGGGTGCAGGACCTGTCCGTGGCCAGCGACCAGGACTGCTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCaa < 2:584586/150‑1 (MQ=255) aTGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAgc > 1:1052105/1‑150 (MQ=255) gcgcAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCa < 1:567660/140‑1 (MQ=255) gcgcAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCa > 2:567660/1‑140 (MQ=255) aCCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTgg < 1:123930/150‑1 (MQ=255) tGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCa > 1:39744/1‑150 (MQ=255) gTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAAc < 1:834817/150‑1 (MQ=255) tGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCG‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACg < 1:507719/150‑1 (MQ=255) cccGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAg > 1:665311/1‑150 (MQ=255) ccGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGtgtg > 1:517168/1‑150 (MQ=255) cGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTgg > 1:787994/1‑150 (MQ=255) tGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGa > 1:122451/1‑150 (MQ=255) tGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGa < 1:722900/150‑1 (MQ=255) gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt < 2:627205/150‑1 (MQ=255) gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt < 1:994347/150‑1 (MQ=255) gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt > 2:322301/1‑150 (MQ=255) tATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTa > 1:220354/1‑150 (MQ=255) tCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTcaccctgtgataatcagcacggtcctcggggtgcaccaggttgcgcaggcccatctgcgggtgctggatctcgctgggtgcataacc < 1:923502‑M2/150‑88 (MQ=255) tCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGt > 1:1090964/1‑150 (MQ=255) acaGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCt < 2:122451/150‑1 (MQ=255) aGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTgg < 2:1097409/150‑1 (MQ=255) cAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTTGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATc < 1:227926/150‑1 (MQ=255) gACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGCAGTCTGGGACATcaca > 2:410495/1‑150 (MQ=255) cctggccctggcCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTa > 2:661456/1‑133 (MQ=255) cctggccctggcCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTa < 1:661456/133‑1 (MQ=255) ctggccctggccAGCGACCAGGACTGGTGCTGGCAGGGGCAAGGTCCTgcaccctgggataatcagcacggtcctcggggtgcaccaggttgcgcaggcccatctgcgggtgctggatctcgctgggtgcataacccaccaaagcctcgc < 1:445630‑M2/150‑103 (MQ=255) tggcccttcctAGCGACCAGTTATGGTACTGGCAGTTCCGCA‑CAATGACCCAGCAGGGTGTACTGCGCTGGGCCCATACCAAGGCCCGCGCCCGGCATCTGGGCAACGTCCAAGTAGTGTAGGACGGTGTAGCCTAGGACATcacacaag < 2:548406/150‑3 (MQ=255) tggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTcaccctgtgataatcagcacggtcctcggggtgcaccaggttgcgcaggcccatctgcgggtgctggatctc < 2:781530‑M2/118‑73 (MQ=255) tggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTcaccctgtgataatcagcacggtcctcggggtgcaccaggttgcgcaggcccatctgcgggtgctggatctc > 1:781530‑M2/1‑46 (MQ=255) gccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGTGc < 1:322301/150‑1 (MQ=255) gACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctggcg > 1:926545/1‑150 (MQ=255) ggTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctggcgctgg < 1:645231/150‑1 (MQ=255) cAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTcc < 2:39744/150‑1 (MQ=255) gcgcA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGa > 2:913423/1‑150 (MQ=255) a‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGagcag < 1:725257/150‑1 (MQ=255) a‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGagcag < 2:1052105/150‑1 (MQ=255) cTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTg > 1:913093/1‑150 (MQ=255) tCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCt > 1:1061882/1‑55 (MQ=255) tCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCt < 2:1061882/55‑1 (MQ=255) tCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTgc < 2:940742/150‑1 (MQ=255) | GCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGC > NC_002947/497590‑497887 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |