New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2248271	35 (0.810)	3 (0.070)	3/244	NT	7.2%	coding (1371/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
	?	NC_002947	= 2248318	44 (1.060)					coding (1324/3297 nt)	PP_1983	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase

TTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGATCGGTGATGTCGAG  >  NC_002947/2248170‑2248459                                                                                                                                                     |                                                                                                                                              ttGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAAc                                                                                                                                              >  1:791428‑M2/1‑149 (MQ=255) ttGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACGCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAAc                                                                                                                                              >  2:934019‑M2/1‑149 (MQ=255)                 cGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGa                                                                                                                              <  1:832855/150‑1 (MQ=255)                   ttACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATg                                                                                                                            >  1:610467/1‑150 (MQ=255)                        cAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTg                                                                                                                       <  2:797413/150‑1 (MQ=255)                            gCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCa                                                                                                                   <  1:409755/150‑1 (MQ=255)                            gCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGCCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCa                                                                                                                   >  2:23768/1‑150 (MQ=255)                               tGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCCGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGGTGAACTGGCCAgtg                                                                                                                >  1:331265/1‑150 (MQ=255)                               tGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGCCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAgtg                                                                                                                <  1:23768/150‑1 (MQ=255)                                    gcgGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTg                                                                                                           >  2:817423/1‑150 (MQ=255)                                        aTCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCgt                                                                                                       <  1:469370/150‑1 (MQ=255)                                        aTCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCgt                                                                                                       <  1:809281/150‑1 (MQ=255)                                               gCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGc                                                                                                >  1:471751/1‑150 (MQ=255)                                                   gATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGAt                                                                                            <  1:110107/150‑1 (MQ=255)                                                    agaCGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGc                                                                                                                     >  2:295448/3‑124 (MQ=255)                                                    aTACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGc                                                                                                                     <  1:295448/124‑1 (MQ=255)                                                    aTACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGAtc                                                                                           <  1:1033854/150‑1 (MQ=255)                                                           tCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGCGTGACGCAGAtcgggtcgg                                                                                    <  2:610467/150‑1 (MQ=255)                                                                  cTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGAc                                                                             <  2:991100/150‑1 (MQ=255)                                                                    ggtgggACTCCGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCt                                                                           <  2:396865/146‑1 (MQ=255)                                                                     gACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTg                                                                          <  1:95163/150‑1 (MQ=255)                                                                            tCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGAtcg                                                                                          >  1:1042518/1‑127 (MQ=255)                                                                            tCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGAtcg                                                                                          <  2:1042518/127‑1 (MQ=255)                                                                            tCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAgg                                                                   >  1:438507/1‑150 (MQ=255)                                                                               gCCCACGGGCCGATTTCCTCGTCGGTACCTCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGTCCAGTGTCCTGGCGTGTGTCGCAGATCGGGTCGGGGCTTACCTGGAACAGGCTg                                                                <  2:373042/150‑1 (MQ=255)                                                                                cccACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTgg                                                               >  2:761919/1‑150 (MQ=255)                                                                                cccACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTgg                                                               >  1:1036286/1‑150 (MQ=255)                                                                                       gCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACtt                                                        <  1:1031232/150‑1 (MQ=255)                                                                                               ccTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCg                                                <  1:817423/150‑1 (MQ=255)                                                                                                 tCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAAcgccgaggaaatcggcctgtgggccgagtccgtcgagcgcgcgaaacgtatcgagcaggtgatccgcgaacaggccttgagtaacgtcgccgtggta                                              <  1:896049‑M2/150‑98 (MQ=255)                                                                                                 tCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAg                                              >  2:924333/1‑150 (MQ=255)                                                                                                    gcggTAAGCCAAAGCAGCTGAGCGCTGCTCCAGCCGAAGGTCTGGGTGAAcgccgaggaaatcggcctgtgggccgagtccgtcgagcgcgcgaaacgtatcgagcaggtgatccgcgaacaggccttgagtaacgtcgccgtggtactc                                           <  2:831105‑M2/150‑101 (MQ=255)                                                                                                           gCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAATTCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGc                                    >  1:852139/1‑150 (MQ=255)                                                                                                                 gCACCTGCGCGCTGCTCCGGCCGAAGGTCTGGGTGAACGCAGGATTGATCTCGATGAACTGGCCAGTGTCGTTTCGGGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCGGGCgttgtt                              >  1:921202/1‑150 (MQ=255)                                                                                                                   aCCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAAcgccgaggaaatcggcctgtgggccgagtccgtcgagcgcgcgaaacgtatcgagcaggtgatccgcgaacaggccttgagtaacgtcgccgtggtactcaaccaccgcaatggc                            >  2:896049‑M2/1‑35 (MQ=255)                                                                                                                   aCCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCTGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTcg                            <  1:901674/150‑1 (MQ=255)                                                                                                                     cTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTcgcg                          >  1:828113/1‑150 (MQ=255)                                                                                                                      tGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCgcgc                         <  1:924333/150‑1 (MQ=255)                                                                                                                          cgcTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCa                     <  1:494096/150‑1 (MQ=255)                                                                                                                                tCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGAt               >  1:522042/1‑150 (MQ=255)                                                                                                                                tCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGAt               >  1:366948/1‑150 (MQ=255)                                                                                                                                tCCAGCCGAAGGTCTGGGTGAACGACGGATTGATCGCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGAt               >  1:533433/1‑150 (MQ=255)                                                                                                                                  cAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGATCg             >  1:66779/1‑150 (MQ=255)                                                                                                                                    gCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGATCGGt           >  1:1075288/1‑150 (MQ=255)                                                                                                                                     ccGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCaaa                                                           <  2:458947/101‑1 (MQ=255)                                                                                                                                     ccGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCaaa                                                           >  1:458947/1‑101 (MQ=255)                                                                                                                                            tCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGATCGGTGATGTCGa   <  2:1075288/150‑1 (MQ=255)                                                                                                                                            tCTGGGTGAACGCCGGATTGAGCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGATCGGTGATGTCGa   <  1:431392/150‑1 (MQ=255)                                                                                                                                             cTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGATCGGTGATGTCGAg  <  2:1036286/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              TTGAGTACCACGGCGACGTTACTCAAGGCCTGTTCGCGGATCACCTGCTCGATACGTTTCGCGCGCTCGACGGACTCGGCCCACAGGCCGATTTCCTCGGCGGTACGCCCAAGCACCTGCGCGCTGCTCCAGCCGAAGGTCTGGGTGAACGCCGGATTGATCTCGATGAACTGGCCAGTGTCCTGGCGTGTGACGCAGATCGGGTCGGGGCTGACCTGGAACAGGCTGGCAAACTTCTCTTCCGAGGCGCTCAGGCGTTGTTCGCGCTCCACCTGATCGGTGATGTCGAG  >  NC_002947/2248170‑2248459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.