New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2337360 =	46 (1.060)	5 (0.120)	5/236	NT	10.6%	coding (745/894 nt)	ybhD	DNA‑binding transcriptional regulator
	?	NC_002947	2337417 =	42 (1.040)					coding (688/894 nt)	ybhD	DNA‑binding transcriptional regulator

GATGCGCCGCGCCGGTACACCAGCCCTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCGGTAATCAGCCAGCTCTGTCCAGGTAACGGAGG  >  NC_002947/2337272‑2337563                                                                                                                                                        |                                                                                                                                                   gATGCGCCGCGCCGGTACACCAGCCCTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGAc                                                                                                                                                >  2:749982/1‑150 (MQ=255)  aTGCGCCGCGCCGGTACACCAGCCCTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACg                                                                                                                                               <  2:258316/150‑1 (MQ=255)              ggTACACCAGCCCTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGtt                                                                                                                                   <  1:598003/150‑1 (MQ=255)               gTACACCAGCCCTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCGCGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTg                                                                                                                                  >  1:847899/1‑150 (MQ=255)                 tcacCAGCCCTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGTTGTGGCa                                                                                                                                <  2:496183/149‑1 (MQ=255)                   acCAGCCCTAGCGGGCGGGTAACTTGCTGGTCGATCACCGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCAca                                                                                                                              >  1:496183/1‑149 (MQ=255)                     cAGCCCTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTc                                                                                                                            >  2:931118/1‑150 (MQ=255)                        cccTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTa                                                                                                                         <  2:558665/150‑1 (MQ=255)                        cccTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTa                                                                                                                         <  1:931118/150‑1 (MQ=255)                           tAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGaa                                                                                                                      >  1:483063/1‑150 (MQ=255)                                 gCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACtt                                                                                                                <  2:329177/150‑1 (MQ=255)                                          ttGNGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAg                                                                                                       >  2:701754/1‑150 (MQ=255)                                          ttGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTa                                                                                                                         >  1:331689/1‑132 (MQ=255)                                          ttGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTa                                                                                                                         <  2:331689/132‑1 (MQ=255)                                          ttGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAg                                                                                                       <  1:71148/150‑1 (MQ=255)                                               gCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAg                                                                                                                                        >  2:549167/1‑112 (MQ=255)                                               gCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAg                                                                                                                                        <  1:549167/112‑1 (MQ=255)                                               gCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGa                                                                                                  >  1:698287/1‑150 (MQ=255)                                                    aagtggttctacgaagtgcaacacctgtccacgtcgcTGGGCATGGTCGAGGCCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAg                                                                                                                                                    <  2:877664‑M1/64‑1 (MQ=255)                                                    aagtggttctacgaagtgcaacacctgtccacgtcgcTGGGCATGGTCGAGGCCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAg                                                                                                                                                    >  1:877664‑M1/38‑101 (MQ=255)                                                           gCANGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACg                                                                                      >  2:702689/1‑150 (MQ=255)                                                             aCGCTCACCAGCGCGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGACCCACTTGGGCCGCAGGTTGAGCCCGGACAACGCa                                                                                    <  1:331012/150‑1 (MQ=255)                                                               gCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATg                                                                                  >  1:731866/1‑150 (MQ=255)                                                               gCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATg                                                                                  >  2:1076030/1‑150 (MQ=255)                                                                  cACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAAc                                                                                                                     <  1:1065241/112‑1 (MQ=255)                                                                  cACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAAc                                                                                                                     >  2:1065241/1‑112 (MQ=255)                                                                  cACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTc                                                                               <  1:822861/150‑1 (MQ=255)                                                                   aCCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTcc                                                                              >  1:156303/1‑150 (MQ=255)                                                                     cAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCcag                                                                            <  1:701754/150‑1 (MQ=255)                                                                      aGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCCGGTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCcagc                                                                           >  1:456675/1‑150 (MQ=255)                                                                                 gtCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGt                                                                                                     >  1:505119/1‑113 (MQ=255)                                                                                 gtCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGt                                                                                                     <  2:505119/113‑1 (MQ=255)                                                                                 gtCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCACAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCGGTGGTGCGCATGGTCCAGCAGCATGCGGtt                                                                <  1:29565/150‑1 (MQ=255)                                                                                     gCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCa                                                            <  1:702689/150‑1 (MQ=255)                                                                                     gCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCa                                                            <  2:847899/150‑1 (MQ=255)                                                                                        ctgggcatggtcgaggccgggctgggcgtgtcggccatgcccagcctggcctcgaccatgcccaGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACtt                                                                                                                >  1:877664‑M2/65‑101 (MQ=255)                                                                                        ctgggcatggtcgaggccgggctgggcgtgtcggccatgcccagcctggcctcgaccatgcccaGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACtt                                                                                                                <  2:877664‑M2/37‑1 (MQ=255)                                                                                            GCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCNggc                                                     >  2:698287‑M1/1‑150 (MQ=255)                                                                                            GCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAggc                                                     <  1:1005363‑M1/150‑1 (MQ=255)                                                                                                 G‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTgg                                                                                                              <  2:314654‑M1/88‑1 (MQ=255)                                                                                                 G‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTgg                                                                                                              >  1:314654‑M1/1‑88 (MQ=255)                                                                                                       gtcgaggccgggctgggcgtgtcggccatgcccagcctggccatgcccaGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCg                                                >  1:969728‑M2/50‑150 (MQ=255)                                                                                                        tcgaggccgggctgggcgtgtcggccatgcccagcctggccatgcccaGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTgg                                                                                                              >  1:448242‑M2/49‑87 (MQ=255)                                                                                                        tcgaggccgggctgggcgtgtcggccatgcccagcctggccatgcccaGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTgg                                                                                                              <  2:448242‑M2/39‑1 (MQ=255)                                                                                                        ccAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGa                                               >  1:344777/1‑150 (MQ=255)                                                                                                         cAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTgg                                                                                                              >  2:40203/1‑86 (MQ=255)                                                                                                         cAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTgg                                                                                                              <  1:40203/86‑1 (MQ=255)                                                                                                                     ggCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCg                                  <  1:620553/150‑1 (MQ=255)                                                                                                                            acGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCGGTAATca                           <  2:344777/150‑1 (MQ=255)                                                                                                                            acGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCCTCCGACGCCGATCAGGCGGTAATca                           <  1:996875/150‑1 (MQ=255)                                                                                                                               cccAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCGGTAATcagcc                        >  1:1084894/1‑150 (MQ=255)                                                                                                                                ccAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCagcagc                                                                        <  2:1073154/101‑1 (MQ=255)                                                                                                                                ccAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCagcagc                                                                        >  1:1073154/1‑101 (MQ=255)                                                                                                                                      cGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCGGTAATCAGCCAGCTCTg                 >  1:1076245/1‑150 (MQ=255)                                                                                                                                           tCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCGGTAATCAGCCAGCTCTGTCCAg            >  2:671544/1‑150 (MQ=255)                                                                                                                                                    cccaGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCGGTAATCAGCCAGCTCTGTCCAGGTAACGGAg   <  2:1084894‑M2/146‑1 (MQ=255)                                                                                                                                                     ccaGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATGAGGCGGTAATCAGCCAGCTCTGTCCAGGTAACGGAgg  <  1:640737‑M2/147‑1 (MQ=255)                                                                                                                                                     ccaGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCGGTAATCAGCCAGCTCTGTCCAGGTAACGGAgg  >  2:1110254‑M2/4‑150 (MQ=255)                                                                                                                                                        |                                                                                                                                                   GATGCGCCGCGCCGGTACACCAGCCCTAGCGTGCGGGTGACTTGCGGCTCGATCAACGGCACGCTCACCAGCGTGGGGTGGTCGGCATTGGGCATGG‑‑‑‑‑‑CCAGGCTGGGCATGGCCGACACGCCCAGCCCGGCCTCGACCATGCCCAGCGACGTGGACAGGTGTTGCACTTCGTAGAACCACTTGGGCCGCAGGTTGAGCCCGGACAACGCATGGTCCAGCAGCATGCGGTTGCCACTCAGGCGGCCGACGCCGATCAGGCGGTAATCAGCCAGCTCTGTCCAGGTAACGGAGG  >  NC_002947/2337272‑2337563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.