| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 883865 | 34 (0.680) | 22 (0.580) | 14/200 | 1.9 | 42.4% | intergenic (+100/‑228) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947 | = 883875 | 34 (0.900) | intergenic (+110/‑218) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
AAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/883685‑883865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcctcttcgcgggtgaacccgctcctacCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTG < NC_002947/883875‑883730 AAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAC > 1:945026/1‑150 TGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGC < 2:992225/150‑1 TGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGC < 2:516338/150‑1 TACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCT < 2:1226095/150‑1 ACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTT > 1:930008/1‑150 GTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGC > 2:1156407/1‑150 CCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCC < 2:362769/150‑1 GCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC < 2:764220/150‑1 AGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGg > 2:470488/1‑149 AGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAC > 2:956953/1‑104 AGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAC < 1:956953/104‑1 CCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCTCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGC < 1:1022676/150‑1 CCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGC < 2:955727/150‑1 CCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGC < 1:587090/150‑1 CGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCG < 2:985023/150‑1 GCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG < 1:1181612/150‑1 GCAGCGCTGCGTCAGTCGGGTATTCGCTAAGATGAAATCACTGAACGCCGTGTGATCCCCAGAACCCCCCGGCGCGCCGGGGCGTTTCTATTTCCGGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG < 1:542305/150‑1 CAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGG < 1:1156407/150‑1 cGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG > 1:189256/2‑97 cGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG < 2:189256/96‑1 ATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGG < 2:175523/115‑1 ATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGG > 1:175523/1‑115 TGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG < 2:166054/109‑1 TGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG > 1:166054/1‑109 CCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACC < 2:1115989/100‑1 CCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACC > 1:1115989/1‑100 AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC < 1:262723/76‑1 AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAAC > 2:262723/1‑76 GCCCCGGCTCGCCGGGGCGTTTCTATTTCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAG > 2:1024858/1‑79 GCCCCGGCTCGCCGGGGCGTTTCTATTTCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAG < 1:1024858/79‑1 GCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG > 1:738184/1‑85 GCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG < 2:738184/85‑1 GTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG > 2:442035/1‑67 GTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG < 1:442035/67‑1 TCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGG < 2:234856/97‑1 TCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGG > 1:234856/1‑97 TTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGG < 1:499492/105‑1 TTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGG > 2:499492/1‑105 GGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAGTACCCGACTGACGC > 2:971561/1‑150 GGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTGCAGTGATTTCAGCTTAGCGAATACCCGACTGACGC > 2:675313/1‑150 gggGAACCCGCTCGTAGCGCGGAACCTGTCGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGAatac < 2:1046281/147‑5 GTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAG > 1:882307/1‑150 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCTCGCCGGGGC < 2:430387/85‑1 CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCTCGCCGGGGC > 1:430387/1‑85 CGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCG > 2:930008/1‑150 CTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTG < 1:95273/150‑1 AAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/883685‑883865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcctcttcgcgggtgaacccgctcctacCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTG < NC_002947/883875‑883730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |