| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 883865 | 34 (0.680) | 22 (0.580) | 14/200 | 1.9 | 42.4% | intergenic (+100/‑228) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947 | = 883875 | 34 (0.900) | intergenic (+110/‑218) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
CAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAA > NC_002947/883730‑884022 | cAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtag < 1:95273‑M2/150‑5 (MQ=255) cGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcg > 2:930008‑M2/1‑141 (MQ=255) cTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcac > 1:882307‑M2/1‑134 (MQ=255) gtattcagtCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCGACAGGTTCCGCGctacgagcgggttcccc < 2:1046281‑M2/146‑18 (MQ=255) gCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGCACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcaccc > 2:675313‑M2/1‑132 (MQ=255) gCGTCAGTCGGGTACTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcaccc > 2:971561‑M2/1‑132 (MQ=255) cTAAGCTGAAATCACTGAACGCCGTGTGATCACCAGACCGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGTCCGCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGggcaag < 2:614167/150‑1 (MQ=255) tCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCAGCCGTACCCGCTCCCACATCTTCGGCGGTGGGAGCGGGGTTACCGTCCAACTGGGCGGGCCAGGCGATCAAcct > 2:941884/1‑150 (MQ=255) cACTGATCGCCGTGTGCTCCCCAGATCGCCCCGGCTCGCCGGGGTGTTTCTATTTCCTGACCCGACCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAccgc < 1:19387/150‑3 (MQ=38) aCTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGggcaaggcaa > 1:99648/1‑141 (MQ=255) aCTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGggcaaggcaa < 2:99648/141‑1 (MQ=255) gCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTTTTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATAc < 1:1046281/150‑1 (MQ=255) cGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCaa > 2:387090/1‑136 (MQ=255) cGTGTGATCCCCAGAACGCCCCGGCGCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCaa < 1:387090/136‑1 (MQ=255) gATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCa < 2:95273/150‑1 (MQ=255) ccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaa < 1:499492‑M2/105‑24 (MQ=255) ccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaa > 2:499492‑M2/1‑82 (MQ=255) ccAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCATGAATACCTCTCCAAAccc > 2:784348/1‑150 (MQ=255) aCGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGcc > 1:293297/1‑150 (MQ=255) gCCCCGGCGAGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgg < 2:430387‑M2/85‑11 (MQ=255) gCCCCGGCGAGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgg > 1:430387‑M2/1‑75 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaaga > 1:234856‑M2/1‑72 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaaga < 2:234856‑M2/97‑26 (MQ=255) gCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGGAGGAGCGGGTGCACCCGCGAAGAGGCCGGGCAAGGCAATCGACCTCCTGAATGCCGCTCCAAAGCCCCGACCCAGcccc > 2:894626/1‑150 (MQ=38) ttCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcct > 2:547338/1‑105 (MQ=255) ttCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcct < 1:547338/105‑1 (MQ=255) ttCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCAt < 1:60933/150‑1 (MQ=255) aTTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcct > 2:249846/1‑101 (MQ=255) aTTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAAcctcct < 1:249846/101‑1 (MQ=255) tGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCCCCCGCGAAGCGGCAAGTTAAGGCAATCAACCGCATGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCttttt < 1:784348/150‑1 (MQ=255) aCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGt < 2:879808/127‑1 (MQ=255) aCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGt > 1:879808/1‑127 (MQ=255) cccGGCCTCTTCGCGGGTGCACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTc < 2:293297/150‑1 (MQ=255) cccGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTc < 1:894626/150‑1 (MQ=255) ccGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGGAGGAGCGGGGTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCg > 1:979116/1‑150 (MQ=255) ttCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGAGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCttt > 2:44338/1‑150 (MQ=255) tCGCGGGTGAACCCGCTCCTACACGGTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCtttt < 1:941884/150‑1 (MQ=255) ggTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggg < 2:1115989‑M2/100‑74 (MQ=255) ggTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggg > 1:1115989‑M2/1‑27 (MQ=255) cccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctg < 1:1156407‑M2/150‑130 (MQ=255) cccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgat > 1:175523‑M2/1‑21 (MQ=255) cccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgat < 2:175523‑M2/115‑95 (MQ=255) cccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTAtt > 1:42092/1‑150 (MQ=255) cccGCTCCGACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTAtt > 1:623709/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtccggaaatagaaacgccccggcgcgccggggggttctggggatcacacggcgttcagtgatttcatcttagcgaatacccgactgacgcagcgctgc < 1:542305‑M2/150‑131 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgc < 1:1181612‑M2/150‑131 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttca < 2:166054‑M2/109‑90 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttca > 1:166054‑M2/1‑20 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggc < 2:738184‑M2/85‑66 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggc > 1:738184‑M2/1‑20 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaac > 2:442035‑M2/1‑20 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaac < 1:442035‑M2/67‑48 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:1013363/1‑150 (MQ=255) cGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcg < 2:985023‑M2/150‑132 (MQ=255) gCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgg < 2:955727‑M2/150‑133 (MQ=255) gCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgg < 1:587090‑M2/150‑133 (MQ=255) gCTCCTACAGGTTCCGCGgtaggagcgggttcacccgagaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgg < 1:1022676‑M2/150‑133 (MQ=255) cTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggcaaggaaatagaaacgccccggcgagccggggc > 2:1024858‑M2/1‑14 (MQ=255) cTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggcaaggaaatagaaacgccccggcgagccggggc < 1:1024858‑M2/79‑66 (MQ=255) cAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAAt < 2:757839/65‑1 (MQ=255) cAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAAt > 1:757839/1‑65 (MQ=255) cAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATAc < 2:427835/67‑1 (MQ=255) cAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATAc > 1:427835/1‑67 (MQ=255) cAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatca < 2:42092/150‑1 (MQ=255) gTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgtt > 2:262723‑M2/1‑8 (MQ=255) gTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgtt < 1:262723‑M2/76‑69 (MQ=255) gTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCTGCGCCTATTGCGCCCATCATCt > 2:1165019/1‑150 (MQ=255) ccggtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggctggaaatcggcct > 2:470488‑M2/2‑3 (MQ=255) | CAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAA > NC_002947/883730‑884022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |