New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5318238 = | 41 (0.840) | 3 (0.070) | 3/234 | NT | 8.2% | coding (1184/1725 nt) | ilvI | acetohydroxybutanoate synthase/acetolactate synthase |
? | NC_002947 | 5318270 = | 29 (0.630) | coding (1152/1725 nt) | ilvI | acetohydroxybutanoate synthase/acetolactate synthase |
CAAGGCGGCGCTGGATGCCTGGTGGAAGCAGATTGACGAATGGCGTGGCAATGGCGAGTTGTTCCCTTACGACAAGGGCGATGGCAACGTCATCAAACCGCAGAAAGTCATCGAGACACTGTGCGAAGTGACCAATGGCGAT‑GCC‑TTCGTCACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5318393‑5318238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcacttcGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTGCCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGCCGATTTCCT > NC_002947/5318270‑5318415 CAAGGCGGCGCTGGATGCCTGGTGGAAGCAGATTGACGAATGGCGTGGCAATGGCGAGTTGTTCCCTTACGACAAGGGCGATGGCAACGTCATCAAACCGCAGAAAGTCATCGAGACACTGTGCGAAGTGACCAATGGCGAT‑GCC‑TTCGT < 1:859688/150‑1 GTGGAAGCAGATTGACGAATGGCGTGGCAATGGCGAGTTGTTCCCTTACGACAAGGGCGATGGCAACGTCATCAAACCGCAGAAAGTCATCGAGACACTGTGCGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGAT < 1:233661/150‑1 GAGTTGTTCCCTTACGACAAGGGCGATGGCAACGTCATCAAACCGCAGAAAGTCATCGAGACACTGTGCGAAGTGACGAA‑GGCATC‑GCCATTGGTCACTTCGCACAGTGTCTCGATGACTTT > 1:87941/1‑122 GAGTTGTTCCCTTACGACAAGGGCGATGGCAACGTCATCAAACCGCAGAAAGTCATCGAGACACTGTGCGAAGTGACGAA‑GGCATC‑GCCATTGGTCACTTCGCACAGTGTCTCGATGACTTT < 2:87941/122‑1 TCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTGCCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGCCGATTT > 2:700583/1‑150 TCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTGCCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGG < 1:1072124/136‑1 TCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTGCCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGG > 2:1072124/1‑136 CTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTGCCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGCCGATTTCCT > 2:1190688/1‑150 CAAGGCGGCGCTGGATGCCTGGTGGAAGCAGATTGACGAATGGCGTGGCAATGGCGAGTTGTTCCCTTACGACAAGGGCGATGGCAACGTCATCAAACCGCAGAAAGTCATCGAGACACTGTGCGAAGTGACCAATGGCGAT‑GCC‑TTCGTCACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5318393‑5318238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcacttcGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTGCCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGCCGATTTCCT > NC_002947/5318270‑5318415 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |