New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5318238 =	41 (0.840)	3 (0.070)	3/234	NT	8.2%	coding (1184/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
	?	NC_002947	5318270 =	29 (0.630)					coding (1152/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase

CCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGCCGATTTCCT  >  NC_002947/5318122‑5318415                                                                                                                                                       |                                                                                                                                                   ccATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGc                                                                                                                                                   >  2:761686/1‑150 (MQ=255)      gccgccGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAgt                                                                                                                                              <  2:1186595/150‑1 (MQ=255)      gccgccGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAgt                                                                                                                                              <  2:930957/150‑1 (MQ=255)      gccgccGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATCCGGCACTTCGCACAgt                                                                                                                                              <  1:369212/150‑1 (MQ=255)              gaagccgaagccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTTACTTCGCACAGTGTCTCGAt                                                                                                                                      <  2:417199/150‑1 (MQ=255)                gtggaagcagattgacgaatggcgtggcaatggcgagttgttcccttacgacaagggcgatggcaacgtcatcaaaccgcagaaagtcatcgagacactgtgcgaagtgacgaaggcatcgccattggtcacttcGCACAGTGTCTCGAt                                                                                                                                      <  1:233661‑M2/15‑1 (MQ=255)                    gaagccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACttt                                                                                                                                >  2:939801/1‑150 (MQ=255)                    gaagccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACttt                                                                                                                                >  2:375095/1‑150 (MQ=255)                       gccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCCGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTg                                                                                                                             <  2:833462/150‑1 (MQ=255)                        cccATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGc                                                                                                                            <  2:1088893/150‑1 (MQ=255)                                                  gagttgttcccttacgacaagggcgatggcaacgtcatcaaaccgcagaaagtcatcgagacactgtgcgaagtgacgaaggcatcgccattggtcacttcGCACAGTGTCTCGATGACttt                                                                                                                                <  2:87941‑M2/21‑1 (MQ=255)                                                  gagttgttcccttacgacaagggcgatggcaacgtcatcaaaccgcagaaagtcatcgagacactgtgcgaagtgacgaaggcatcgccattggtcacttcGCACAGTGTCTCGATGACttt                                                                                                                                >  1:87941‑M2/102‑122 (MQ=255)                                                     ccAGTGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTc                                                                                              <  1:599339/150‑1 (MQ=255)                                                        gCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGc                                                                                                     >  2:548605/1‑140 (MQ=255)                                                        gCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGc                                                                                                     <  1:548605/140‑1 (MQ=255)                                                                     ttgAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCg                                                                              <  1:761686/150‑1 (MQ=255)                                                                       gAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGc                                                                                                     >  2:168495/1‑125 (MQ=255)                                                                       gAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGc                                                                                                     <  1:168495/125‑1 (MQ=255)                                                                            ggTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGc                                                                       <  1:375095/150‑1 (MQ=255)                                                                              tagtaCTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACACCGTCCCACTGACGTTCGGCGGTTTTATGCCGTTG‑TCATCGCCCCCGCCGGAAGCGAACAACTCGCCATTGCCa                                                                     >  1:542489/1‑150 (MQ=255)                                                                                gtaCTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACg                                                                   <  1:939801/150‑1 (MQ=255)                                                                                    tGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCAt                                                               <  2:854480/150‑1 (MQ=255)                                                                                                aaagtcatcgagacactgtgcGAAGTGACCAATGGC‑GATGCC‑TTCGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTc                                                                               >  1:87941‑M1/22‑122 (MQ=255)                                                                                                aaagtcatcgagacactgtgcGAAGTGACCAATGGC‑GATGCC‑TTCGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTc                                                                               <  2:87941‑M1/101‑1 (MQ=255)                                                                                                      atcgagacactgtgcGAAGTGACCAATGGCGAT‑GCC‑TTCGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTccac                                             <  1:233661‑M1/135‑1 (MQ=255)                                                                                                         tGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTc                                                             <  2:867904/131‑1 (MQ=255)                                                                                                         tGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTc                                                             >  1:867904/1‑131 (MQ=255)                                                                                                             ccACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTTGATGACTTTCTg                                                                                                                             >  1:463326/1‑64 (MQ=255)                                                                                                             ccACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTTGATGACTTTCTg                                                                                                                             <  2:463326/64‑1 (MQ=255)                                                                                                             ccACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGCTGACTTTCTGCGGTTTGCTG‑CGTTGTCCATCGCCCTTGTCGTACGGGTCATGCGCGCTATTGCCACGCCCTTCGTCAATATGCTTCCACCAGGCAt                                      >  1:287681/1‑150 (MQ=255)                                                                                                              cACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCAt                                                               <  2:885601/124‑1 (MQ=255)                                                                                                              cACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCAt                                                               >  1:885601/1‑124 (MQ=255)                                                                                                               aCGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATcc                                    <  1:220374/150‑1 (MQ=255)                                                                                                                           ACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTg                        <  1:859688‑M1/150‑1 (MQ=255)                                                                                                                             gAA‑GGC‑ATCGCAATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTc                      >  1:895726/1‑150 (MQ=255)                                                                                                                                  gC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCgccgcc                           >  1:388022/1‑141 (MQ=255)                                                                                                                                  gC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCgccgcc                           <  2:388022/141‑1 (MQ=255)                                                                                                                                          cATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGc           <  1:526323/150‑1 (MQ=255)                                                                                                                                           aTTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGcc          <  1:231024/150‑1 (MQ=255)                                                                                                                                                tcacttcGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAgg                   >  2:1072124‑M2/8‑136 (MQ=255)                                                                                                                                                tcacttcGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAgg                   <  1:1072124‑M2/129‑1 (MQ=255)                                                                                                                                                tcacttcGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGCCGAttt     >  2:700583‑M2/8‑150 (MQ=255)                                                                                                                                                   cttcGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGCCGATTTCCt  >  2:1190688‑M2/5‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                   CCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCCAGCGCCGCCTTGTCAGGCTGCTCGCCGATTTCCT  >  NC_002947/5318122‑5318415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.