| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5318238 = | 41 (0.840) | 3 (0.070) | 3/234 | NT | 8.2% | coding (1184/1725 nt) | ilvI | acetohydroxybutanoate synthase/acetolactate synthase |
| ? | NC_002947 | 5318270 = | 29 (0.630) | coding (1152/1725 nt) | ilvI | acetohydroxybutanoate synthase/acetolactate synthase | |||||
CGTCCTGATCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCC > NC_002947/5318092‑5318381 | aggaaatcggcgagcagcctgacaaggcggcgctggatgcctggtggaagcagattgacgaatggcgtggcaatggcgagttgttcccttacgacaagggcgatggcaacgtcatcaaaccgcagaaagtcatcgagacactgtgcGAAg > 2:1190688‑M1/147‑150 (MQ=255) ccTGATCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGa < 1:568854/150‑1 (MQ=255) aaatcggcgagcagcctgacaaggcggcgctggatgcctggtggaagcagattgacgaatggcgtggcaatggcgagttgttcccttacgacaagggcgatggcaacgtcatcaaaccgcagaaagtcatcgagacactgtgcGAAGTGa > 2:700583‑M1/144‑150 (MQ=255) aTCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGag > 2:1215570/1‑149 (MQ=255) aTCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGaa < 1:1095789/150‑1 (MQ=255) aTCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGAGCCAGCGGATTGGCTTGTTGAATCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGaa > 2:231024/1‑150 (MQ=255) tCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGagg < 1:1215570/150‑3 (MQ=255) ttGAGCTTGACGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCa > 2:220374/1‑150 (MQ=255) cctgacaaggcggcgctggatgcctggtggaagcagattgacgaatggcgtggcaatggcgagttgttcccttacgacaagggcgatggcaacgtcatcaaaccgcagaaagtcatcgagacactgtgcGAAGTGa > 2:1072124‑M1/130‑136 (MQ=255) cctgacaaggcggcgctggatgcctggtggaagcagattgacgaatggcgtggcaatggcgagttgttcccttacgacaagggcgatggcaacgtcatcaaaccgcagaaagtcatcgagacactgtgcGAAGTGa < 1:1072124‑M1/7‑1 (MQ=255) aCGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTg < 2:681155/126‑1 (MQ=255) aCGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTg > 1:681155/1‑126 (MQ=255) ccATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGc > 2:761686/1‑150 (MQ=255) gccgccGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAgt < 2:930957/150‑1 (MQ=255) gccgccGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAgt < 2:1186595/150‑1 (MQ=255) gccgccGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATCCGGCACTTCGCACAgt < 1:369212/150‑1 (MQ=255) cgGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCg > 2:876648/1‑124 (MQ=255) cgGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCg < 1:876648/124‑1 (MQ=255) gaagccgaagccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTTACTTCGCACAGTGTCTCGAt < 2:417199/150‑1 (MQ=255) gaagccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTg > 2:704682/1‑121 (MQ=255) gaagccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTg < 1:704682/121‑1 (MQ=255) gaagccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACttt > 2:375095/1‑150 (MQ=255) gaagccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACttt > 2:939801/1‑150 (MQ=255) gccCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCCGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTg < 2:833462/150‑1 (MQ=255) cccATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGc < 2:1088893/150‑1 (MQ=255) ccAGTGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTc < 1:599339/150‑1 (MQ=255) gCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGc > 2:548605/1‑140 (MQ=255) gCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGc < 1:548605/140‑1 (MQ=255) ttgAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCg < 1:761686/150‑1 (MQ=255) gAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGc < 1:168495/125‑1 (MQ=255) gAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGc > 2:168495/1‑125 (MQ=255) ggTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGc < 1:375095/150‑1 (MQ=255) tagtaCTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACACCGTCCCACTGACGTTCGGCGGTTTTATGCCGTTG‑TCATCGCCCCCGCCGGAAGCGAACAACTCGCCATTGCCa > 1:542489/1‑150 (MQ=255) gtaCTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACg < 1:939801/150‑1 (MQ=255) tGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCAt < 2:854480/150‑1 (MQ=255) cAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑g < 2:641583/38‑1 (MQ=255) cAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑g > 1:641583/1‑38 (MQ=255) aaagtcatcgagacactgtgcGAAGTGACCAATGGC‑GATGCC‑TTCGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTc > 1:87941‑M1/22‑122 (MQ=255) aaagtcatcgagacactgtgcGAAGTGACCAATGGC‑GATGCC‑TTCGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTc < 2:87941‑M1/101‑1 (MQ=255) atcgagacactgtgcGAAGTGACCAATGGCGAT‑GCC‑TTCGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTccac < 1:233661‑M1/135‑1 (MQ=255) tGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTc > 1:867904/1‑131 (MQ=255) tGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTc < 2:867904/131‑1 (MQ=255) ccACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTTGATGACTTTCTg < 2:463326/64‑1 (MQ=255) ccACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTTGATGACTTTCTg > 1:463326/1‑64 (MQ=255) ccACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGCTGACTTTCTGCGGTTTGCTG‑CGTTGTCCATCGCCCTTGTCGTACGGGTCATGCGCGCTATTGCCACGCCCTTCGTCAATATGCTTCCACCAGGCAt > 1:287681/1‑150 (MQ=255) cACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCAt > 1:885601/1‑124 (MQ=255) cACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCAt < 2:885601/124‑1 (MQ=255) aCGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATcc < 1:220374/150‑1 (MQ=255) | CGTCCTGATCCGGGAAGTTGAGCTTGACGCCCATCGCCGCCGGGAAGCCGAAGCCCATGGTGCCCAGGCCACCGGAGTTGATCCAGCGGTTTGGCTTGTTGAAGCGGTAGTACTGCGCGGCAAACATCTGGTGCTGGCCCACGTCGGAAGTGACGAA‑GGC‑ATCGCCATTGGTCACTTCGCACAGTGTCTCGATGACTTTCTGCGGTTTGATGACGTTG‑CCATCGCCCTTGTCGTAAGGGAACAACTCGCCATTGCCACGCCATTCGTCAATCTGCTTCCACCAGGCATCC > NC_002947/5318092‑5318381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |