New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3340972	89 (0.780)	5 (0.050)	5/230	NT	5.2%	coding (351/420 nt)	PP_2937	integrase
	?	NC_002947	= 3340986	97 (0.900)					coding (337/420 nt)	PP_2937	integrase

TCGAACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3340818‑3340972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctccTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGCAGTTC  <  NC_002947/3340986‑3340838                                                                                                                                                                                                                                                                                                                  tccAACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCCTGTCATGCGGGGGTTCTAGATGTGTATTTAGGCCCTGTCGTCAGTCTTCGGCCTATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCA                                                                                                                                                            <  1:604699/147‑1   GAACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGC                                                                                                                                                          >  2:630950/1‑150    AACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCT                                                                                                                                                         <  1:2670687/150‑1                          GCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGAGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCA                                                                                                                                                            <  2:1557666/125‑1                          GCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGAGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCA                                                                                                                                                            >  1:1557666/1‑125                                TGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCTCCTCGGACTGGAGGGAGCTGGAGAA                                                                                                                             <  2:2111085/150‑1                                              GAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCTCCTCGGACTTGAGGGAGCTGGAGAAGCTGC                                                                                                                        <  1:560151/141‑1                                              GAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCTCCTCGGACTTGAGGGAGCTGGAGAAGCTGC                                                                                                                        >  2:560151/1‑141                                                                                                                                        GCGGCAGCTTCTCCAGCTCCTCCTCGGACTGGAGGGAGCTGGA                                                                                                                                <  1:450277/43‑1                                                                                                                                        GCGGCAGCTTCTCCAGCTCCTCCTCGGACTGGAGGGAGCTGGA                                                                                                                                >  2:450277/1‑43                                                                                                                                                      AGCTCCTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGC       >  1:260860/1‑150                                                                                                                                                       GCTCCTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGA                                                                                    >  1:2438193/1‑72                                                                                                                                                       GCTCCTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGA                                                                                    <  2:2438193/72‑1                                                                                                                                                          CCTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGCAGTT   >  1:2645690/1‑150                                                                                                                                                           CTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGCAGTcc  >  2:2829974/1‑148                                                                                                                                                           CTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCA                                             <  1:377238/107‑1                                                                                                                                                           CTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCA                                             >  2:377238/1‑107                                                                                                                                                                                                                                                                                                                  TCGAACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3340818‑3340972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctccTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGCAGTTC  <  NC_002947/3340986‑3340838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.