BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3340972	89 (0.780)	5 (0.050)	5/230	NT	5.2%	coding (351/420 nt)	PP_2937	integrase
*	?	NC_002947	= 3340986	97 (0.900)	5 (0.050)	5/230	NT	5.2%	coding (337/420 nt)	PP_2937	integrase

Only 100 of 128 total aligned reads displayed.

GCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCG  >  NC_002947/3340825‑3341121

gCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGTGGCAGCTTCTCCAGctccct                                                                                                                                                     <  1:920353/150‑1 (MQ=255)

 cGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGctccctc                                                                                                                                                    <  1:2077354/150‑1 (MQ=255)

   gCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCa                                                                                                                                                  <  2:2685059/150‑1 (MQ=255)

        gAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTATCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCg                                                                                                                                             >  1:971335/1‑150 (MQ=255)

         aGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCga                                                                                                                                            >  2:260860/1‑150 (MQ=255)

         aGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCga                                                                                                                                            <  1:1656690/150‑1 (MQ=255)

             ggactGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAg                                                                                                                                        >  2:2829974‑M2/3‑149 (MQ=255)

              aaCTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAgg                                                                                                                                       >  1:2645690‑M2/1‑148 (MQ=255)

               aCTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGctccctc                                                                                                                                                    <  1:2741144/136‑1 (MQ=255)

               aCTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGctccctc                                                                                                                                                    >  2:2741144/1‑136 (MQ=255)

                      ggTGATGTTAGCGGTAGAAATCAAGTGCCTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTNGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATc                                                                                                                               <  1:781117/150‑1 (MQ=255)

                       gTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGCGCTGATcc                                                                                                                              >  2:1104024/1‑150 (MQ=255)

                        tGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCtcctcggactggagggagctggagaa                                                                                                                             <  2:2111085‑M1/150‑27 (MQ=255)

                              tAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTcgc                                                                                                                       <  2:951731/150‑1 (MQ=255)

                                gCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCgagg                                                                                                                                          >  2:2550972/1‑129 (MQ=255)

                                gCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCgagg                                                                                                                                          <  1:2550972/129‑1 (MQ=255)

                                  ggTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCgtag                                                                                                                   <  2:436803/150‑1 (MQ=255)

                                      gAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCtcctcggacttgagggagctggagaagctgc                                                                                                                        >  2:560151‑M1/1‑110 (MQ=255)

                                      gAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCgtaggtag                                                                                                               >  2:2816878/1‑150 (MQ=255)

                                         aTCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGGAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTagaga                                                                                                            >  2:904830/1‑150 (MQ=255)

                                         aTCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTagaga                                                                                                            >  2:1541758/1‑150 (MQ=255)

                                             aGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCaa                                                                                                        <  2:2981257/150‑1 (MQ=255)

                                                 cTTGTCCTGTGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtc                                                                                                    <  1:572955/150‑1 (MQ=255)

                                                 cTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCga                                                                                                                                            >  1:1491617/1‑110 (MQ=255)

                                                 cTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtc                                                                                                    >  1:1669307/1‑150 (MQ=255)

                                                  ttGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCAttt                                                                                                                          <  1:144443/127‑1 (MQ=255)

                                                  ttGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCAttt                                                                                                                          >  2:144443/1‑127 (MQ=255)

                                                  ttGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtct                                                                                                   <  1:630950/150‑1 (MQ=255)

                                                   tGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtctc                                                                                                  <  2:1466155/150‑1 (MQ=255)

                                                        tGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAg                                                                                                                                        <  1:377238‑M2/107‑2 (MQ=255)

                                                         gCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCt                                                                                            <  2:336599/150‑1 (MQ=255)

                                                          cGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCa                                                                                                                                                  <  2:913055/95‑1 (MQ=255)

                                                          cGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCa                                                                                                                                                  >  1:913055/1‑95 (MQ=255)

                                                           gggggTTCCAGAGGTGTATTTAGGCTTTGTCGTCATTTTTGGTTCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCtgt                                                                                          <  2:1430630/150‑1 (MQ=255)

                                                            ggggTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCtgtg                                                                                         <  2:2395539/150‑1 (MQ=255)

                                                             gggTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTTGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGCCGCCGTgg                                                                                        <  2:2424479/150‑1 (MQ=255)

                                                               gTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTGCGCAGCCCCCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAACGCAACATATCGACGCTGTGGcc                                                                                      >  1:969359/1‑150 (MQ=255)

                                                                    agagGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCt                                                                                 >  2:1514695/1‑150 (MQ=255)

                                                                      agGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTgg                                                                               <  1:2816878/150‑1 (MQ=255)

                                                                         tgtATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAAc                                                                                                       <  1:714912/123‑1 (MQ=255)

                                                                         tgtATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAAc                                                                                                       >  2:714912/1‑123 (MQ=255)

                                                                         tgtATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTc                                                                            >  2:203019/1‑150 (MQ=255)

                                                                          gtATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTcg                                                                           >  2:1371995/1‑150 (MQ=255)

                                                                             tttAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAg                                                                                   <  2:1952669/139‑1 (MQ=255)

                                                                             tttAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAg                                                                                   >  1:1952669/1‑139 (MQ=255)

                                                                               tAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCtgtg                                                                                         <  2:1126399/131‑1 (MQ=255)

                                                                                    ccTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAAcgc                                                                 >  2:10734/1‑150 (MQ=255)

                                                                                     cTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCCGGCTCGCGATGAAcgcg                                                                >  2:1997285/1‑150 (MQ=255)

                                                                                      tGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCgg                                                               <  2:1669307/150‑1 (MQ=255)

                                                                                      tGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCgg                                                               >  2:738140/1‑150 (MQ=255)

                                                                                       gtcgtcAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCggg                                                              <  1:2110771/150‑1 (MQ=255)

                                                                                               tCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAggagc                                                                                                                                    <  2:2438193‑M2/72‑6 (MQ=255)

                                                                                               tCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAggagc                                                                                                                                    >  1:2438193‑M2/1‑67 (MQ=255)

                                                                                                 ttgggccaattttgggccaattCGACTCAGGTCGGCAGCTTCTCCAACTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCca                                                    >  1:564086/1‑150 (MQ=255)

                                                                                                  gatgcctattttgggcctattGGACTCGGGGCGGCCGCTTCTTTAGCTCCCCCCAGTACGAGGAGGCGCTCTTCCATTTCCCGTAGGTATAGTGCAACATCTCCACGCTGTGCCTCAGCTGGCTCGCGTTGCACGCGGGGTTCATCCcag                                                   <  2:13168/147‑1 (MQ=255)

                                                                                                      ccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcat                                               <  1:2842241/150‑1 (MQ=255)

                                                                                                      ccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcat                                               >  2:414796/1‑150 (MQ=255)

                                                                                                       caattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCa                                                                                                                                                  >  1:692646/1‑50 (MQ=255)

                                                                                                       caattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatc                                              >  1:1085874/1‑150 (MQ=255)

                                                                                                       caattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatc                                              >  2:1826541/1‑150 (MQ=255)

                                                                                                       caattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTAGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatc                                              >  1:1074514/1‑150 (MQ=255)

                                                                                                         attttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag                                            <  1:10734/150‑1 (MQ=255)

                                                                                                             tgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcaggcat                                        <  1:1104024/150‑1 (MQ=255)

                                                                                                               ggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAg                                      >  1:1198058/1‑150 (MQ=255)

                                                                                                               ggccaattCGACTCGGCCCGCCAGCAAATCCAGCTCACTCCAGTTCGTTTAGGAGGTTATCCTTTTCGCGGAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGAGGTTCATCCCAGGCATCAGGCATAg                                      >  2:1572186/1‑150 (MQ=255)

                                                                                                                 ccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAggg                                    >  2:1381625/1‑150 (MQ=255)

                                                                                                                  caattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGa                                                                        <  2:1472298/113‑1 (MQ=255)

                                                                                                                  caattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGa                                                                        >  1:1472298/1‑113 (MQ=255)

                                                                                                                   aattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGATGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTg                                  <  2:971335/150‑1 (MQ=255)

                                                                                                                        gACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTTATCCCAGGCATCATGCATAGGGTGGCGTa                             <  2:969359/150‑1 (MQ=255)

                                                                                                                         aCTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAg                            <  1:203019/150‑1 (MQ=255)

                                                                                                                           tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGTTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGgt                          >  2:2083702/1‑150 (MQ=255)

                                                                                                                           tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCaa                                                                                    <  2:1242029/92‑1 (MQ=255)

                                                                                                                           tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCaa                                                                                    >  1:1242029/1‑92 (MQ=255)

                                                                                                                           tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCAt                                                        <  2:320373/120‑1 (MQ=255)

                                                                                                                           tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCAt                                                        >  1:320373/1‑120 (MQ=255)

                                                                                                                             ggggCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGgtgt                        >  2:138515/1‑150 (MQ=255)

                                                                                                                                gcggcAGCTTCTCCAGCTCCtcctcggactggagggagctgga                                                                                                                                <  1:450277‑M1/43‑24 (MQ=255)

                                                                                                                                gcggcAGCTTCTCCAGCTCCtcctcggactggagggagctgga                                                                                                                                >  2:450277‑M1/1‑20 (MQ=255)

                                                                                                                                  ggcAGCTTCTCCAGCTCCCTCCAGTCCGACAATGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg                   <  1:1541758/150‑1 (MQ=255)

                                                                                                                                   gcAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGa                                                                        >  1:872629/1‑96 (MQ=255)

                                                                                                                                   gcAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGa                                                                        <  2:872629/96‑1 (MQ=255)

                                                                                                                                   gcAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCggg                  >  2:784142/1‑150 (MQ=255)

                                                                                                                                   gcAGCTTCTCCAGCTCCCTCAAGTCCGAGGAggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaagactgacgacagggcctaaatacacctctggaacccccgcaggacaagcacttgatttc                           <  1:560151‑M2/141‑111 (MQ=255)

                                                                                                                                   gcAGCTTCTCCAGCTCCCTCAAGTCCGAGGAggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaagactgacgacagggcctaaatacacctctggaacccccgcaggacaagcacttgatttc                           >  2:560151‑M2/1‑31 (MQ=255)

                                                                                                                                          ctcCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag                                            >  2:595601/1‑117 (MQ=255)

                                                                                                                                          ctcCAGCTCCCTCCAGTCCGAGGAGGAGCTGAGCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGTATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTa           <  1:1393349/150‑1 (MQ=255)

                                                                                                                                           tcCAGCTCCCTCCAGTCCGAGGAggagctggagaagctgccgc                                                                                                                     <  1:450277‑M2/43‑21 (MQ=255)

                                                                                                                                           tcCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGGTGAACGCGGGGTTTATCCCAGGAATCAGGCATAGGGTGGCGTAGGTGTGGAGGGTgtagtaa          >  2:994981/1‑149 (MQ=255)

                                                                                                                                           tcCAACTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTAc          <  2:564086/150‑1 (MQ=255)

                                                                                                                                              aGCTCCtcctcggactggagggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaagactgacgacagggcctaaatacacctctggaacccccgcaggacaagcacttgatttctaccgctaacatcaccatgc       >  1:260860‑M1/1‑6 (MQ=255)

                                                                                                                                              aGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag                                            <  1:997269/113‑1 (MQ=255)

                                                                                                                                              aGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGa       <  1:414796/150‑1 (MQ=255)

                                                                                                                                               gCTCCtcctcggactggagggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaaga                                                                                    >  1:2438193‑M1/1‑5 (MQ=255)

                                                                                                                                               gCTCCtcctcggactggagggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaaga                                                                                    <  2:2438193‑M1/72‑68 (MQ=255)

                                                                                                                                                  cctcctcggactggagggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaagactgacgacagggcctaaatacacctctggaacccccgcaggacaagcacttgatttctaccgctaacatcaccatgcagtt   >  1:2645690‑M1/1‑2 (MQ=255)

                                                                                                                                                  ccctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGc   <  1:138515/150‑1 (MQ=255)

                                                                                                                                                   ctcctcggactggagggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaagactgacgacagggcctaaatacacctctggaacccccgcaggacaagcacttgatttctaccgctaacatcaccatgcagtcc  >  2:2829974‑M1/1‑1 (MQ=255)

                                                                                                                                                   ctcctcggactggagggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaagactgacgacagggcctaaatacacctctggaacccccgca                                             >  2:377238‑M1/1‑1 (MQ=255)

                                                                                                                                                   cctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCg  >  1:2696968/1‑150 (MQ=255)

GCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCG  >  NC_002947/3340825‑3341121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.