BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3340972	89 (0.780)	5 (0.050)	5/230	NT	5.2%	coding (351/420 nt)	PP_2937	integrase
*	?	NC_002947	= 3340986	97 (0.900)	5 (0.050)	5/230	NT	5.2%	coding (337/420 nt)	PP_2937	integrase

Only 100 of 113 total aligned reads displayed.

AACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGT  >  NC_002947/3340839‑3341132

aaCTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAgg                                                                                                                                                  >  1:2645690‑M2/1‑148 (MQ=255)

        ggTGATGTTAGCGGTAGAAATCAAGTGCCTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTNGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATc                                                                                                                                          <  1:781117/150‑1 (MQ=255)

         gTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGCGCTGATcc                                                                                                                                         >  2:1104024/1‑150 (MQ=255)

                tAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTcgc                                                                                                                                  <  2:951731/150‑1 (MQ=255)

                 cgCGGAAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGGGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCTGGGCGGCAGCTTCGCCAGCTCCCTCCAGTCCGAGGAGGAGCGGCTCCATTTctcg                                                                                                                                 >  2:1393349/2‑150 (MQ=255)

                    ggTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCgtag                                                                                                                              <  2:436803/150‑1 (MQ=255)

                        gAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCgtaggtag                                                                                                                          >  2:2816878/1‑150 (MQ=255)

                           aTCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGGAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTagaga                                                                                                                       >  2:904830/1‑150 (MQ=255)

                           aTCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTagaga                                                                                                                       >  2:1541758/1‑150 (MQ=255)

                               aGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCaa                                                                                                                   <  2:2981257/150‑1 (MQ=255)

                                gTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAAc                                                                                                                  <  1:2423357/150‑1 (MQ=255)

                                   cTTGTCCTGTGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtc                                                                                                               <  1:572955/150‑1 (MQ=255)

                                   cTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtc                                                                                                               >  2:2842241/1‑150 (MQ=255)

                                   cTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtc                                                                                                               >  1:1669307/1‑150 (MQ=255)

                                    ttGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCAttt                                                                                                                                     <  1:144443/127‑1 (MQ=255)

                                    ttGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCAttt                                                                                                                                     >  2:144443/1‑127 (MQ=255)

                                    ttGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtct                                                                                                              <  1:630950/150‑1 (MQ=255)

                                     tGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACAtctc                                                                                                             <  2:1466155/150‑1 (MQ=255)

                                          tGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAg                                                                                                                                                   >  2:377238‑M2/1‑106 (MQ=255)

                                           gCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCt                                                                                                       <  2:336599/150‑1 (MQ=255)

                                             gggggTTCCAGAGGTGTATTTAGGCTTTGTCGTCATTTTTGGTTCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCtgt                                                                                                     <  2:1430630/150‑1 (MQ=255)

                                              ggggTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCtgtg                                                                                                    <  2:2395539/150‑1 (MQ=255)

                                               gggTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTTGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGCCGCCGTgg                                                                                                   <  2:2424479/150‑1 (MQ=255)

                                                 gTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTGCGCAGCCCCCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAACGCAACATATCGACGCTGTGGcc                                                                                                 >  1:969359/1‑150 (MQ=255)

                                                      agagGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCt                                                                                            >  2:1514695/1‑150 (MQ=255)

                                                       gagGCGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTg                                                                                           >  2:969051/1‑150 (MQ=255)

                                                        agGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTgg                                                                                          <  1:2816878/150‑1 (MQ=255)

                                                           tgtATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAAc                                                                                                                  >  2:714912/1‑123 (MQ=255)

                                                           tgtATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTc                                                                                       >  2:203019/1‑150 (MQ=255)

                                                            gtATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTcg                                                                                      >  2:1371995/1‑150 (MQ=255)

                                                               tttAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGCGCCCAGCATCGCGACGCTGTGGCCAAGCTGGCTCGCGa                                                                                   >  2:246895/1‑150 (MQ=255)

                                                               tttAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAg                                                                                              <  2:1952669/139‑1 (MQ=255)

                                                               tttAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAg                                                                                              >  1:1952669/1‑139 (MQ=255)

                                                                 tAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCtgtg                                                                                                    >  1:1126399/1‑131 (MQ=255)

                                                                 tAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCtgtg                                                                                                    <  2:1126399/131‑1 (MQ=255)

                                                                     cccTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAAcg                                                                             >  2:201691/1‑150 (MQ=255)

                                                                      ccTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAAcgc                                                                            >  2:10734/1‑150 (MQ=255)

                                                                       cTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCCGGCTCGCGATGAAcgcg                                                                           >  2:1997285/1‑150 (MQ=255)

                                                                        tGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCgg                                                                          <  2:1669307/150‑1 (MQ=255)

                                                                        tGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCgg                                                                          >  2:738140/1‑150 (MQ=255)

                                                                         gtcgtcAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCggg                                                                         <  1:1514695/150‑1 (MQ=255)

                                                                         gtcgtcAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCggg                                                                         <  1:2110771/150‑1 (MQ=255)

                                                                                 tCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAggagc                                                                                                                                               <  2:2438193‑M2/72‑6 (MQ=255)

                                                                                 tCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAggagc                                                                                                                                               >  1:2438193‑M2/1‑67 (MQ=255)

                                                                                   ttgggccaattttgggccaattCGACTCAGGTCGGCAGCTTCTCCAACTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCca                                                               >  1:564086/1‑150 (MQ=255)

                                                                                    gatgcctattttgggcctattGGACTCGGGGCGGCCGCTTCTTTAGCTCCCCCCAGTACGAGGAGGCGCTCTTCCATTTCCCGTAGGTATAGTGCAACATCTCCACGCTGTGCCTCAGCTGGCTCGCGTTGCACGCGGGGTTCATCCcag                                                              <  2:13168/147‑1 (MQ=255)

                                                                                      ggccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGATGAGCTGATCCATTTc                                                                                                                                    >  2:272811/1‑78 (MQ=255)

                                                                                      ggccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTc                                                                                                                                    <  1:272811/78‑1 (MQ=255)

                                                                                        ccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcat                                                          >  2:414796/1‑150 (MQ=255)

                                                                                        ccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcat                                                          <  1:2842241/150‑1 (MQ=255)

                                                                                         caattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatc                                                         >  2:1826541/1‑150 (MQ=255)

                                                                                         caattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatc                                                         >  1:1085874/1‑150 (MQ=255)

                                                                                         caattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTAGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatc                                                         >  1:1074514/1‑150 (MQ=255)

                                                                                           attttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag                                                       <  1:10734/150‑1 (MQ=255)

                                                                                               tgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcaggcat                                                   <  1:1104024/150‑1 (MQ=255)

                                                                                                 ggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAg                                                 >  1:1198058/1‑150 (MQ=255)

                                                                                                 ggccaattCGACTCGGCCCGCCAGCAAATCCAGCTCACTCCAGTTCGTTTAGGAGGTTATCCTTTTCGCGGAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGAGGTTCATCCCAGGCATCAGGCATAg                                                 >  2:1572186/1‑150 (MQ=255)

                                                                                                   ccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTTGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGGATAggg                                               >  1:1432484/1‑150 (MQ=255)

                                                                                                   ccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAggg                                               >  2:1381625/1‑150 (MQ=255)

                                                                                                    caattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGa                                                                                   <  2:1472298/113‑1 (MQ=255)

                                                                                                    caattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGa                                                                                   >  1:1472298/1‑113 (MQ=255)

                                                                                                     aattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGATGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTg                                             <  2:971335/150‑1 (MQ=255)

                                                                                                          gACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTTATCCCAGGCATCATGCATAGGGTGGCGTa                                        <  2:969359/150‑1 (MQ=255)

                                                                                                           aCTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAg                                       <  1:203019/150‑1 (MQ=255)

                                                                                                             tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGTTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGgt                                     >  2:2083702/1‑150 (MQ=255)

                                                                                                             tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCaa                                                                                               <  2:1242029/92‑1 (MQ=255)

                                                                                                             tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCaa                                                                                               >  1:1242029/1‑92 (MQ=255)

                                                                                                             tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCAt                                                                   <  2:320373/120‑1 (MQ=255)

                                                                                                             tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCAt                                                                   >  1:320373/1‑120 (MQ=255)

                                                                                                                    ggcAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCCGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg                              <  1:1997285/150‑1 (MQ=255)

                                                                                                                    ggcAGCTTCTCCAGCTCCCTCCAGTCCGACAATGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg                              <  1:1541758/150‑1 (MQ=255)

                                                                                                                     gcAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGa                                                                                   >  1:872629/1‑96 (MQ=255)

                                                                                                                     gcAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCggg                             >  2:784142/1‑150 (MQ=255)

                                                                                                                     gcAGCTTCTCCAGCTCCCTCAAGTCCGAGGAggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaagactgacgacagggcctaaatacacctctggaacccccgcaggacaagcacttgatttc                                      <  1:560151‑M2/141‑111 (MQ=255)

                                                                                                                     gcAGCTTCTCCAGCTCCCTCAAGTCCGAGGAggagctggagaagctgccgccccgagtcgaattggcccaaaattggcccaagactgacgacagggcctaaatacacctctggaacccccgcaggacaagcacttgatttc                                      >  2:560151‑M2/1‑31 (MQ=255)

                                                                                                                         cTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTAGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTc                         <  2:1074514/150‑1 (MQ=255)

                                                                                                                            ctcCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag                                                       <  1:595601/117‑1 (MQ=255)

                                                                                                                            ctcCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag                                                       >  2:595601/1‑117 (MQ=255)

                                                                                                                            ctcCAGCTCCCTCCAGTCCGAGGAGGAGCTGAGCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGTATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTa                      <  1:1393349/150‑1 (MQ=255)

                                                                                                                             tcCAGCTCCCTCCAGTCCGAGGAggagctggagaagctgccgc                                                                                                                                >  2:450277‑M2/1‑23 (MQ=255)

                                                                                                                             tcCAGCTCCCTCCAGTCCGAGGAggagctggagaagctgccgc                                                                                                                                <  1:450277‑M2/43‑21 (MQ=255)

                                                                                                                             tcCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGGTGAACGCGGGGTTTATCCCAGGAATCAGGCATAGGGTGGCGTAGGTGTGGAGGGTgtagtaa                     >  2:994981/1‑149 (MQ=255)

                                                                                                                             tcCAACTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTAc                     <  2:564086/150‑1 (MQ=255)

                                                                                                                                aGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag                                                       <  1:997269/113‑1 (MQ=255)

                                                                                                                                aGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGa                  <  1:414796/150‑1 (MQ=255)

                                                                                                                                     cctccAGTCCGAGGAGGAGCTTATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCAACTGGTGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCg             <  1:969051/150‑1 (MQ=255)

                                                                                                                                     cctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCg             >  2:131064/1‑150 (MQ=255)

                                                                                                                                     cctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCg             >  1:2696968/1‑150 (MQ=255)

                                                                                                                                       tccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTCGATTTGGCGGGTGTCGTACTGACGGCGtt           >  1:1541558/1‑150 (MQ=255)

                                                                                                                                            tCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg                              <  2:78529/126‑1 (MQ=255)

                                                                                                                                            tCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGAc                 >  2:1901697/1‑139 (MQ=255)

                                                                                                                                            tCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCGGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg                              >  1:78529/1‑126 (MQ=255)

                                                                                                                                              cGAGGAGGATCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGAt    <  1:131064/150‑1 (MQ=255)

                                                                                                                                              cGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTa                                        <  1:598427/114‑1 (MQ=255)

                                                                                                                                              cGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTa                                        >  2:598427/1‑114 (MQ=255)

                                                                                                                                              cGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTa                      <  1:253558/132‑1 (MQ=255)

                                                                                                                                              cGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTa                      >  2:253558/1‑132 (MQ=255)

                                                                                                                                              cGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGAt    <  2:890513/150‑1 (MQ=255)

                                                                                                                                               gaggaggagCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATg   >  1:1971181/1‑150 (MQ=255)

                                                                                                                                                aggaggagCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGt  >  1:2611191/1‑150 (MQ=255)

AACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGT  >  NC_002947/3340839‑3341132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.