New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5333243 =	21 (1.240)	6 (0.400)	6/248	1.1	24.6%	intergenic (+27/‑216)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	5333303 =	18 (1.190)					intergenic (+87/‑156)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein

CTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTA  >  NC_002947/5333112‑5333392                                                                                                                                    |                                                                                                                                                      ctgctgTTGGCGACGCCGGCAGAGGTGCTGGCCGTCGCCCGCGCGCACTGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGCCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAAcc                                                                                                                                     >  2:16405/1‑150 (MQ=255)      gTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCAcgcc                                                                                                                                <  1:392565/150‑1 (MQ=255)       gaacttattattggcgcaaatggcaggggggatgctagcgggaatccacagcgttcgccaagggtttgaatttactgggcttttgtttttagggggggtacctgtgccggcctcttcgcgggcgcGCCCGCTCCCACAGGAACCAcgccg                                                                                                                               <  2:187452‑M1/25‑1 (MQ=255)           cGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCtt                                                                                                                           <  2:410422/150‑1 (MQ=255)              cGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCaa                                                                                                                        <  2:64477/150‑1 (MQ=255)                        ggTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTggg                                                                                                              <  2:5263/150‑1 (MQ=255)                              ggCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCGCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAccg                                                                                                        >  1:94336/1‑149 (MQ=255)                              caggggggatgctagcgggaatccacagcgttcgccaagggtttgaatttactgggcttttgtttttagggggggtacctgtgccggccctttcgcgggcatGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCt                                                                                                        >  1:338050‑M1/103‑150 (MQ=255)                                 gggggatgctagcgggaatccacagcgttcgccaagggtttgaatttactgggcttttgtttttagggggggtacctgtgccggccctttcgcgggcatGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCtgtg                                                                                                     >  2:208826‑M1/100‑150 (MQ=255)                                  gTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTgg                                                                                                    <  1:199533/150‑1 (MQ=255)                                               aaTGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGcc                                                                                       <  1:62627/150‑1 (MQ=255)                                                              cGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGc                                                                        <  1:116179/150‑1 (MQ=255)                                                                 caagggtttgaatttactgggcttttgtttttagggggggtacctgtgccggcctcttcgcgggcgcGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGcaca                                                                     >  1:187452‑M1/68‑150 (MQ=255)                                                                  cgcgCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAg                                                                    <  1:41435/150‑1 (MQ=255)                                                                       aGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGGAcc                                                               >  2:300010/1‑150 (MQ=255)                                                                              cACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAg                                                                    >  1:268291/1‑138 (MQ=255)                                                                              cACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCCTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAg                                                                    <  2:268291/138‑1 (MQ=255)                                                                                        tttgtttttagggggggtacctgtgccggccctttcgcgggcatGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCggg                                                                                             <  2:163350‑M1/59‑1 (MQ=255)                                                                                        tttgtttttagggggggtacctgtgccggccctttcgcgggcatGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCggg                                                                                             >  1:163350‑M1/45‑103 (MQ=255)                                                                                                            cTTTACGGGCCTCTTCGCGGGCGCGCCCGCTACCCCAGGAACAACCACGCATTCAAGGCCTCTGGGCTACCGGTGATATCGGGCTTGCCCCCGAAATGGCCGGCCCAGGTACCCCCCCTAAAAACAAAAACCCAGTAAATTCAACCCCtc                          >  2:254642/1‑149 (MQ=255)                                                                                                                    gCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAGTTCAAACCCTTGGCGAACg                  >  2:273436/1‑150 (MQ=255)                                                                                                                     ccTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCa                                 <  1:210806/134‑1 (MQ=255)                                                                                                                     ccTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCa                                 >  2:210806/1‑134 (MQ=255)                                                                                                                        ctTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGGGGGCTACATGCGGAAGAGCTTATGCCTGAGAAAGGGCCGGCCCCGGTACCCACGCTAACCACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCtgt              <  1:300010/150‑1 (MQ=255)                                                                                                                         ttCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCtgtg             <  2:108114/150‑1 (MQ=255)                                                                                                                         ttCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCtgtg             >  1:108114/1‑150 (MQ=255)                                                                                                                         ttCGCGGGCGCGCCCGCTCCCACAAGAACCCCGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGACTCCCCGCGAAAACGCCGGCACAGGTACCCCCCATAAAAACAAAAGCACAGTAAAGAAAAACCCTTGGCGAACACtgtg             >  2:179980/1‑150 (MQ=255)                                                                                                                                    GCCCGAGCCCACAGGAACCACGCAGCCTTAAAGGCCTGTGGGCCACCTCTGCGAGCTGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTa  >  2:149270‑M1/1‑150 (MQ=255)                                                                                                                                    |                                                                                                                                                      CTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTA  >  NC_002947/5333112‑5333392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.